Browse Element(s) Details


Os.53958.1.S1_at

Description gb:AK101021.1
DB_XREF= gi:32986230
TID=Os.53958.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149K19, full insert sequence.
FL= gb:AK101021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0112011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53958.1.S1_at--797--2251Chr05:80178..80202 (25 bp)
AAATATTGACGCCAGGTCTCTCCAC
LOC_Os05g01120
Os.53958.1.S1_at--558--7931Chr05:80145..80169 (25 bp)
GGATGTTTTCGACAACCCAACGGTG
LOC_Os05g01120
Os.53958.1.S1_at--981--3251Chr05:80128..80152 (25 bp)
CAACGGTGTTTGATCCTTCTAGGTT
LOC_Os05g01120
Os.53958.1.S1_at--1001--6431Chr05:79901..79925 (25 bp)
GATCATGATGCTTATCTTCCTACAC
LOC_Os05g01120
Os.53958.1.S1_at--1047--5031Chr05:79751..79775 (25 bp)
GCAGATGACGATCCAAGCCTTGAGA
LOC_Os05g01120
Os.53958.1.S1_at--715--5451Chr05:79728..79752 (25 bp)
GAAATGGGCAATGTTCCCCAGGTTA
LOC_Os05g01120
Os.53958.1.S1_at--450--10471Chr05:79706..79730 (25 bp)
TTAAAGAACGGATGCCCCATTCTGC
LOC_Os05g01120
Os.53958.1.S1_at--676--9691Chr05:79681..79705 (25 bp)
TCACACCCATCCACAATTCTTGATA
LOC_Os05g01120
Os.53958.1.S1_at--112--9631Chr05:79633..79657 (25 bp)
TCATGATGACTTGTGGACCGTGGCT
LOC_Os05g01120
Os.53958.1.S1_at--16--4791Chr05:79611..79635 (25 bp)
GCTGCCTAGCTACTTTATCTGTTTA
LOC_Os05g01120
Os.53958.1.S1_at--833--2431Chr05:79460..79484 (25 bp)
AAAAGACCTGCTATCTGGAGTAGAT
LOC_Os05g01120
Target Sequence 
AAATATTGACGCCAGGTCTCTCCACTACGACCCGGATGTTTTCGACAACCCAACGGTGTTTGATCCTTCTAGGTTCGACG
AAGAGGGAGAGGGAGATGATGCGAAGCTTGGGCGTGCACAACCACAGAAGAGGAGGCTGCTGGTATTTGGAGCAGGCGGG
AGGACATGTCTGGGGATGAACCACGCCAAGATCATGATGCTTATCTTCCTACACCGCCTTCTCACCAATTTCAGATGGGA
GATGGCAGATGACGATCCAAGCCTTGAGAAATGGGCAATGTTCCCCAGGTTAAAGAACGGATGCCCCATTCTGCTCACAC
CCATCCACAATTCTTGATAATGTTCCAGATTAATTAGATTCTTCATGATGACTTGTGGACCGTGGCTGCCTAGCTACTTT
ATCTGTTTAATTAGTAAGGTAGTATTAACAAAAACTGCTGTCAATTTATTCGAAACTAGCGGTATTGTACTGTAACTAAT
AGCCTAGAGATGGAATTCGGAGGAAGGATATTCCTTTGTTATTTGTAATAAATAAAAAAGACCTGCTATCTGGAGTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis