Browse Element(s) Details


Os.54050.1.S1_at

Description gb:AK101554.1
DB_XREF= gi:32986763
TID=Os.54050.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050A06, full insert sequence.
FL= gb:AK106986.1 gb:AK101554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2940410/11Isoamylase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29360OsAffx.30076.1.S1_at11/119+17825478..17827459Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29370NANA9+17829901..17833915Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29380Os.14254.1.S1_at11/119+17834904..17837015expressed protein
LOC_Os09g29390Os.14537.1.S1_at11/119+17842410..17843627Blue copper protein precursor, putative, expressed
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005983biological_processstarch catabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0004556molecular_functionalpha-amylase activity
GO:0019156molecular_functionisoamylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54050.1.S1_at--931--8131NONE
GGAACCGTGTGGTGGATACCAACCT
NONE
Os.54050.1.S1_at--579--331Chr09:17856794..17856818 (25 bp)
ATACAGAATTGCTCCATACTCTTCC
LOC_Os09g29404
Os.54050.1.S1_at--766--9231Chr09:17856772..17856796 (25 bp)
TCCATTCTGCTCAAGGCAAAGCCTT
LOC_Os09g29404
Os.54050.1.S1_at--396--9771Chr09:17856718..17856742 (25 bp)
TAATGCCACCAATGCTGGCTTGGTT
LOC_Os09g29404
Os.54050.1.S1_at--892--7911Chr09:17856682..17856706 (25 bp)
GGTTGATCACATTAGCAGTCTGCAC
LOC_Os09g29404
Os.54050.1.S1_at--1053--4211Chr09:17856615..17856639 (25 bp)
CCGAATCATAGTTGGCTTTGGCAGA
LOC_Os09g29404
Os.54050.1.S1_at--138--4411Chr09:17856586..17856610 (25 bp)
GCCACTTTTGGCATTCAGGAATTTC
LOC_Os09g29404
Os.54050.1.S1_at--26--2331Chr09:17856504..17856528 (25 bp)
AAAGCTCGAGGTGTCGTCTCGGTTT
LOC_Os09g29404
Os.54050.1.S1_at--772--10311Chr09:17856482..17856506 (25 bp)
TTTCATGTGAGCGTGACCTGGCTAT
LOC_Os09g29404
Os.54050.1.S1_at--498--4871Chr09:17856462..17856486 (25 bp)
GCTATGGTCACCCTATCATTTATCA
LOC_Os09g29404
Os.54050.1.S1_at--819--7791Chr09:17856436..17856460 (25 bp)
GGTCCTGTTTCGTAATAATGTGTCA
LOC_Os09g29404
Target Sequence 
GGAACCGTGTGGTGGATACCAACCTGGAATCACCAAATGATATTGTACCAGAAGGGGTGCCATTTACAGGACCAAAATAC
AGAATTGCTCCATACTCTTCCATTCTGCTCAAGGCAAAGCCTTAGAAAAGTTAGTAGTTGAGAGCATAAAAATAATGCCA
CCAATGCTGGCTTGGTTGGTTAATAACAGGTTGATCACATTAGCAGTCTGCACTTCAAAAAGGCAACAGGTATAGAGAAT
GTCTAATAACAACTGCCGAATCATAGTTGGCTTTGGCAGATGAGGCCACTTTTGGCATTCAGGAATTTCTTCCAGTTATT
ACTGTAGGAATGAATGGGCTAGGGCTTAGGGCCCTCTGGGGGCAGCAAAGCTCGAGGTGTCGTCTCGGTTTCATGTGAGC
GTGACCTGGCTATGGTCACCCTATCATTTATCAAGGTCCTGTTTCGTAATAATGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis