Browse Element(s) Details


Os.54194.1.S1_at

Description gb:AK102454.1
DB_XREF= gi:32987663
TID=Os.54194.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094A13, full insert sequence.
FL= gb:AK102454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3371011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33670OsAffx.21178.1.S1_x_at11/111+18857174..18858169expressed protein
LOC_Os01g33684Os.32933.1.S1_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33684Os.32933.2.S1_x_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33700Os.40360.1.S1_x_at1/111+18875724..18881551hypothetical protein
LOC_Os01g33710Os.54194.1.S1_at11/111+18882549..18883659expressed protein
LOC_Os01g33720OsAffx.2145.1.S1_at11/111+18885871..18886444hypothetical protein
LOC_Os01g33730NANA1+18887292..18888959retrotransposon protein, putative, unclassified
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54194.1.S1_at--896--6392Chr03:24778774..24779258 (25 bp)
GATCGATCATGCCAGCAACCCAAAA
NONE
Os.54194.1.S1_at--383--3231Chr01:18882958..18882982 (25 bp)
CAACCCAAAAACTGACGCTGTCGCT
LOC_Os01g33710
Os.54194.1.S1_at--135--91Chr01:18883032..18883056 (25 bp)
ATTCCTTGGAGGTCGCACGCCTATG
LOC_Os01g33710
Os.54194.1.S1_at--406--1431Chr01:18883122..18883146 (25 bp)
AGAAAACCTCCATCCGCAGCATGTA
LOC_Os01g33710
Os.54194.1.S1_at--899--1531Chr01:18883139..18883163 (25 bp)
AGCATGTACCGCTGTTTGCAGGTCT
LOC_Os01g33710
Os.54194.1.S1_at--280--6851Chr01:18883152..18883176 (25 bp)
GTTTGCAGGTCTTCAACGGTACCAA
LOC_Os01g33710
Os.54194.1.S1_at--136--6971Chr01:18883170..18883194 (25 bp)
GTACCAATGATTATCCTACCCGACG
LOC_Os01g33710
Os.54194.1.S1_at--432--10031Chr01:18883200..18883224 (25 bp)
TAGACTACCCACTGGAAGAGCAGCA
LOC_Os01g33710
Os.54194.1.S1_at--1005--8711Chr01:18883508..18883532 (25 bp)
TGTAATTGGTAACCCCTTCCGAGTG
LOC_Os01g33710
Os.54194.1.S1_at--460--271Chr01:18883547..18883571 (25 bp)
ATATGTATGCCCAGCAGTAATATGC
LOC_Os01g33710
Os.54194.1.S1_at--303--5551Chr01:18883601..18883625 (25 bp)
GAAACTGTGCAATCCATAATGTGTC
LOC_Os01g33710
Target Sequence 
GATCGATCATGCCAGCAACCCAAAAACTGACGCTGTCGCTCGCCACACCACCGACGCCGTCGCCTGCCGTTTGCTCCGCG
GCTCTTCCCATTCCTTGGAGGTCGCACGCCTATGGCACCATCGGTCACCGCCGCACATACTCTTTGCCGCCCCTTCCTCT
CCCTCCATCACCCGCAGCGAGAAAACCTCCATCCGCAGCATGTACCGCTGTTTGCAGGTCTTCAACGGTACCAATGATTA
TCCTACCCGACGCCCAGTAGACTACCCACTGGAAGAGCAGCAAACTGATGAACATCGTCTAGAAGACCAGGGAGATATAC
ATGTCCATAAGCATTGGACAAAATGGAGACAAGATTCAAAGGAATCACGAGAGCAGGCAATGAAGGAATGAGGAATCTAA
CTCTAAGAAATAGACAGTTTCAACATCTGTAATTGGTAACCCCTTCCGAGTGTTTTTTAAATTAAAATATGTATGCCCAG
CAGTAATATGCTGAAATGATATTTGGGTGGTGCAGGAAATGAAACTGTGCAATCCATAATGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis