Browse Element(s) Details


Os.54205.1.A1_at

Description gb:AK102514.1
DB_XREF= gi:32987723
TID=Os.54205.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095J08, full insert sequence.
FL= gb:AK102514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1441010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14360OsAffx.3790.1.S1_at11/114+8020498..8022115hypothetical protein
LOC_Os04g14370OsAffx.18604.2.S1_at11/114+8022985..8026614hypothetical protein
LOC_Os04g14380NANA4+8030406..8030789retrotransposon protein, putative, unclassified
LOC_Os04g14390NANA4+8034149..8034382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14400NANA4+8042155..8044227retrotransposon protein, putative, unclassified
LOC_Os04g14410Os.54205.1.A1_at10/114+8044491..8052126expressed protein
LOC_Os04g14410OsAffx.22306.1.S1_at1/114+8044491..8052126expressed protein
LOC_Os04g14420NANA4+8057599..8059204hypothetical protein
LOC_Os04g14430NANA4+8059922..8062431retrotransposon protein, putative, unclassified
LOC_Os04g14450Os.49397.1.S1_x_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14450Os.49397.1.S1_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54205.1.A1_at--358--9551Chr04:8046544..8046568 (25 bp)
TCTTTGGTATGGCTACTATTCGCAA
LOC_Os04g14410
Os.54205.1.A1_at--862--6571NONE
GATTGTTACCCAGATCTTGCCAAAC
NONE
Os.54205.1.A1_at--810--3191Chr04:8045386..8045410 (25 bp)
CAATCGCTTGGCTCTGTTGCGTGGG
LOC_Os04g14410
Os.54205.1.A1_at--696--1291Chr04:8044834..8044858 (25 bp)
AGATGATCAATTCAGGCCGTGGAGA
LOC_Os04g14410
Os.54205.1.A1_at--875--5991Chr04:8044811..8044835 (25 bp)
GAGACGATCACAAACGCTACAAAAT
LOC_Os04g14410
Os.54205.1.A1_at--1032--9491Chr04:8044729..8044753 (25 bp)
TCTCGCCCATCATTGTTGTAAATAC
LOC_Os04g14410
Os.54205.1.A1_at--524--10071Chr04:8044638..8044662 (25 bp)
TAGGATAACCTTGGGTTCTCTCACC
LOC_Os04g14410
Os.54205.1.A1_at--716--9671Chr04:8044618..8044642 (25 bp)
TCACCTTCTCTTTGTGTAACTGAGT
LOC_Os04g14410
Os.54205.1.A1_at--285--6831Chr04:8044563..8044587 (25 bp)
GTTTACTTGTACTAACTCAGTCCGA
LOC_Os04g14410
Os.54205.1.A1_at--32--3451Chr04:8044546..8044570 (25 bp)
CAGTCCGAATTCTGGAACACCCTAT
LOC_Os04g14410
Os.54205.1.A1_at--269--3491Chr04:8044517..8044541 (25 bp)
CATGGCTTTCTATCGGAGGAGCAAA
LOC_Os04g14410
Target Sequence 
TCTTTGGTATGGCTACTATTCGCAANCCNTNGACANGGNAACGTCGNACACGCTGTGGTGTGAAGTATTACTACTCTCAA
CATGAGAAGGCAAAATCATATTTTGATTGTTACCCAGATCTTGCCAAACAAGTTGAAGAAGCCAGCTATCCCAATCGCTT
GGCTCTGTTGCGTGGGCTTTTCTTCTGGTTGGAGAATATTGGGCAAGATGATCAATTCAGGCCGTGGAGAGACGATCACA
AACGCTACAAAATTATGTCTCTCTGAGAACACATAACAAAGTTCTTACTTGNATGTGATTATCTGCAGCNTCTCGCCCAT
CATTGTTGTAAATACGTACCCAGTAAAAAACCGTAGAATGGAAATGGCACTGAATTTAGGCCNTTCTCTAGTCTCCATAG
ATAGGATAACCTTGGGTTCTCTCACCTTCTCTTTGTGTAACTGAGTATGGGGTTGACTAAAATGTGTTTAGAGAATGTTT
ACTTGTACTAACTCAGTCCGAATTCTGGAACACCCTATNGCTCATGGCTTTCTATCGGAGGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54205.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis