Browse Element(s) Details


Os.49397.1.S1_x_at

Description gb:AK068979.1
DB_XREF= gi:32979003
TID=Os.49397.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003J09, full insert sequence.
FL= gb:AK068979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1445011/11pentatricopeptide, putative, expressed
LOC_Os11g373002/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14400NANA4+8042155..8044227retrotransposon protein, putative, unclassified
LOC_Os04g14410Os.54205.1.A1_at10/114+8044491..8052126expressed protein
LOC_Os04g14410OsAffx.22306.1.S1_at1/114+8044491..8052126expressed protein
LOC_Os04g14420NANA4+8057599..8059204hypothetical protein
LOC_Os04g14430NANA4+8059922..8062431retrotransposon protein, putative, unclassified
LOC_Os04g14450Os.49397.1.S1_x_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14450Os.49397.1.S1_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein
LOC_Os04g14470Os.52238.1.S1_at2/114+8077818..8078825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14480OsAffx.26035.1.S1_at11/114+8081059..8081946hypothetical protein
LOC_Os04g14490NANA4+8082426..8085910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49397.1.S1_x_at--876--9051Chr04:8066256..8066280 (25 bp)
TGCATGGTGATCTTGAGCTCGGCAC
LOC_Os04g14450
Os.49397.1.S1_x_at--235--1591Chr04:8066241..8066265 (25 bp)
AGCTCGGCACGTTTGCTGCAAAGAA
LOC_Os04g14450
Os.49397.1.S1_x_at--695--3131Chr04:8066216..8066240 (25 bp)
AATTTTGGAGTTGGACCCTAATCAT
LOC_Os04g14450
Os.49397.1.S1_x_at--979--3451Chr04:8066057..8066081 (25 bp)
CAGTGTTCATCAGTTTGCAGTTGGA
LOC_Os04g14450
Os.49397.1.S1_x_at--214--351Chr04:8065974..8065998 (25 bp)
ATAAAGGTGTGTGGCTATGCTCCGA
LOC_Os04g14450
Os.49397.1.S1_x_at--375--8291Chr04:8065962..8065986 (25 bp)
GGCTATGCTCCGAAGGTTAACAATG
LOC_Os04g14450
Os.49397.1.S1_x_at--1024--3011Chr04:8065941..8065965 (25 bp)
AATGCTTCTGTTGATTTGTGCAAGG
LOC_Os04g14450
Os.49397.1.S1_x_at--958--8172Chr11:21527977..21527999 (23 bp)
GGAAGCTTGCCCCTTTCATTTAGGA
LOC_Os11g37300
Os.49397.1.S1_x_at--762--6011Chr04:8065841..8065865 (25 bp)
GAGAGTTTTGCTTGAACATTGTATA
LOC_Os04g14450
Os.49397.1.S1_x_at--839--1072Chr11:21528053..21528077 (25 bp)
AGGGCTGAGATTCTTCCGTGAAGTC
LOC_Os11g37300
Os.49397.1.S1_x_at--101--1251Chr04:8065760..8065784 (25 bp)
AGTTGTATATTATTCTTCCGTTAAG
LOC_Os04g14450
Target Sequence 
TGCATGGTGATCTTGAGCTCGGCACGTTTGCTGCAAAGAAAATTTTGGAGTTGGACCCTAATCATGGTGGAGCACAAGTG
CTCTTATCAAATATATATGCAGAATATGGAAACTGGAATGATGTTAAGGAGGTAAGGGGAGTAATGGAAGTCCAGGGGAC
GTGGAAGAAGAAAGGTTGCAGTTGGATGGAGCTGAATGGCAGTGTTCATCAGTTTGCAGTTGGAGGTGAAAAAATTTTGG
AAATGAAAGGATCCTTCTGAAGCTTGATGAGATAACTGCAAAATAAAGGTGTGTGGCTATGCTCCGAAGGTTAACAATGC
TTCTGTTGATTTGTGCAAGGAAAATATCAGAGAAGCTGTCTGGTGTCTACTGTTCATTGGGAAGCTTGCCCCTTTCATTT
AGGATGGTCAGTTGAGAGAGTTTTGCTTGAACATTGTATAGAATAGAAGGGAGTTTTTGAGGGCTGAGATTCTTCCGTGA
AGTCTGTGGAATTTTTAGTTGTATATTATTCTTCCGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis