Browse Element(s) Details


OsAffx.26035.1.S1_at

Description tigr:9632.m01325
TID=OsAffx.26035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14420NANA4+8057599..8059204hypothetical protein
LOC_Os04g14430NANA4+8059922..8062431retrotransposon protein, putative, unclassified
LOC_Os04g14450Os.49397.1.S1_x_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14450Os.49397.1.S1_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein
LOC_Os04g14470Os.52238.1.S1_at2/114+8077818..8078825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14480OsAffx.26035.1.S1_at11/114+8081059..8081946hypothetical protein
LOC_Os04g14490NANA4+8082426..8085910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein
LOC_Os04g14510Os.17436.1.S1_at11/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_x_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_at10/114+8097280..8106127PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26035.1.S1_at--667--10791Chr04:8081594..8081618 (25 bp)
TTGTTGCTGCACCATCTTCTCAGAT
LOC_Os04g14480
OsAffx.26035.1.S1_at--475--9571Chr04:8081580..8081604 (25 bp)
TCTTCTCAGATGTCGTTTGCATCCA
LOC_Os04g14480
OsAffx.26035.1.S1_at--838--3731Chr04:8081532..8081556 (25 bp)
CTAACAACAGTTGGGCCGGCACTTC
LOC_Os04g14480
OsAffx.26035.1.S1_at--257--4011Chr04:8081489..8081513 (25 bp)
CGTCGCAGCCAAGGGAGACTATCTT
LOC_Os04g14480
OsAffx.26035.1.S1_at--530--5991Chr04:8081475..8081499 (25 bp)
GAGACTATCTTGTCGCGTCATGACC
LOC_Os04g14480
OsAffx.26035.1.S1_at--511--4091Chr04:8081433..8081457 (25 bp)
CGACGGCAGCGAGGCATCTTCAAGC
LOC_Os04g14480
OsAffx.26035.1.S1_at--585--10671Chr04:8081405..8081429 (25 bp)
TTCCTCGAGCATCGACAGCGATTAC
LOC_Os04g14480
OsAffx.26035.1.S1_at--220--1651Chr04:8081389..8081413 (25 bp)
AGCGATTACGCTACGCGCTGCTCAA
LOC_Os04g14480
OsAffx.26035.1.S1_at--297--831Chr04:8081234..8081258 (25 bp)
ATGGTTCTGGTGTCCTTCCTCTATG
LOC_Os04g14480
OsAffx.26035.1.S1_at--1041--3631Chr04:8081220..8081244 (25 bp)
CTTCCTCTATGTGCTTCCGGGTGGG
LOC_Os04g14480
OsAffx.26035.1.S1_at--82--8271Chr04:8081167..8081191 (25 bp)
GGCAGGGACCACCAACATAATTTTA
LOC_Os04g14480
Target Sequence 
TTGTTGCTGCACCATCTTCTCAGATGTCGTTTGCATCCAAGGCTGCGGCAGTGCTGCCCTGCCTAACAACAGTTGGGCCG
GCACTTCCTGGGGCACCATCAACCCCGTCGCAGCCAAGGGAGACTATCTTGTCGCGTCATGACCGTTCCCTTCTACGACC
ACGACGGCAGCGAGGCATCTTCAAGCAGCTTCCTCGAGCATCGACAGCGATTACGCTACGCGCTGCTCAACGGCGGGGAG
AATCGAGTGCGGCGCCACCGGCGTGGGATCTAGGCGGGCCACGCAAGCCGCACTTTCGGGCGGCGATCGCGGCATGTGCG
GCGCGTGCGATGTGGCTTCTGGTGGCGCCTTCCTCTCTGCATGGTTCTGGTGTCCTTCCTCTATGTGCTTCCGGGTGGGG
CCCACCTGAGCTTGGCTGCGGAAGAATGGCAGGGACCACCAACATAATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis