Browse Element(s) Details


OsAffx.3791.1.S1_x_at

Description tigr:9632.m01329
TID=OsAffx.3791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1451010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein
LOC_Os04g14470Os.52238.1.S1_at2/114+8077818..8078825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14480OsAffx.26035.1.S1_at11/114+8081059..8081946hypothetical protein
LOC_Os04g14490NANA4+8082426..8085910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein
LOC_Os04g14510Os.17436.1.S1_at11/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_x_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14520NANA4+8110054..8112207Transposable element protein, putative, Transposase_28
LOC_Os04g14530NANA4+8113161..8113535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14540OsAffx.13818.1.S1_at11/114+8115965..8118262hypothetical protein
LOC_Os04g14550OsAffx.19542.3.S1_x_at5/114+8122380..8127818retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3791.1.S1_x_at--1085--951Chr04:8105080..8105104 (25 bp)
AGGACGCTGAGCATTTGCGGCGATA
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--663--5931Chr04:8105041..8105065 (25 bp)
GAGCACTCTGTGGACGATGACGCAA
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--453--2331Chr04:8105018..8105042 (25 bp)
AAAGAGGACATCTCCACCAAGTGAT
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--176--9851Chr04:8104782..8104806 (25 bp)
TAAATTCTGATTTGCACGTGCTTGT
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--654--6131Chr04:8104742..8104766 (25 bp)
GAGGGCTTCATCCTCAGAACGAAGT
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--287--9771Chr04:8104712..8104736 (25 bp)
TAAGAAGTGCTCTGCCTCGAAGGAA
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--106--1831NONE
ACGATTTGTGAAGCTCTACCCACCT
NONE
OsAffx.3791.1.S1_x_at--661--1751Chr04:8103697..8103721 (25 bp)
ACCTCACTTGAGTGCGCCAGGTGGA
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--47--3471Chr04:8103353..8103377 (25 bp)
CAGTGAGCTGCACCTGCCAATGGGT
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--219--6111Chr04:8103319..8103343 (25 bp)
GAGTGGCAAAGTCACCAGCAGACCC
LOC_Os04g14510
OsAffx.3791.1.S1_x_at--414--3411Chr04:8103304..8103328 (25 bp)
CAGCAGACCCTTGCATGGCGAAGGT
LOC_Os04g14510
Target Sequence 
AGGACGCTGAGCATTTGCGGCGATAAGGTGGATGGCGTTGAGCACTCTGTGGACGATGACGCAAAGAGGACATCTCCACC
AAGTGATGCAAAGAAGAGAGGAACATCCATTAGCATTGTAGAGCCTGATACTTGGGACAATGGTTGTGAGAAGAAAAGGG
ATTTTGATGTGCCAGCTAGTGAGGATCAGCATGCCAAAACAAACATGGTAAATTCTGATTTGCACGTGCTTGTTGAAGCT
AAGAAGAAGAGGGCTTCATCCTCAGAACGAAGTGGGGATAAGAAGTGCTCTGCCTCGAAGGAAATTACTGGGATGCTAAA
GAAATATGAACCTAAGGAGTCCAAGCGATTGGTGATATCCTCAGGAGTTGCAACAACGGCAGCTGTAGCAGAGCAAGAAG
TGCACTCACGATTTGTGAAGCTCTACCCACCTCACTTGAGTGCGCCAGGTGGAGGAGAGATGCATGGCAGTGAGCTGCAC
CTGCCAATGGGTGGAGGAGCAGAGTGGCAAAGTCACCAGCAGACCCTTGCATGGCGAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3791.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis