Browse Element(s) Details


Os.54253.1.S1_at

Description gb:AK102822.1
DB_XREF= gi:32988031
TID=Os.54253.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108P05, full insert sequence.
FL= gb:AK102822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g133007/11Helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12804NANA5+7328674..7331071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12808NANA5+7336097..7336984uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g13300Os.54253.1.S1_at7/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300OsAffx.31500.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300Os.19965.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13320Os.50364.1.S1_at11/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13320Os.5608.3.S1_x_at1/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009411biological_processresponse to UV
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54253.1.S1_at--1101--3691Chr05:7348997..7349021 (25 bp)
CTACTGACAAACTACCCCAATGGAT
LOC_Os05g13300
Os.54253.1.S1_at--323--2411Chr05:7348970..7348994 (25 bp)
AAACACGACTTGCTTGTGCTCAAAA
LOC_Os05g13300
Os.54253.1.S1_at--95--6751Chr05:7348935..7348959 (25 bp)
GTTCATAGATTGTTGCACCAGTTCT
LOC_Os05g13300
Os.54253.1.S1_at--949--6431Chr05:7348875..7348899 (25 bp)
GATCACACGGTTTCAGAACAGTTCA
LOC_Os05g13300
Os.54253.1.S1_at--448--8831Chr05:7347339..7347363 (25 bp)
TGATTTAGTCTGCTGATTTTCCAAA
LOC_Os05g13300
Os.54253.1.S1_at--1001--6551Chr05:7346928..7346952 (25 bp)
GATTCAGGACGATCAAGCTTCACTT
LOC_Os05g13300
Os.54253.1.S1_at--609--3091Chr05:7346899..7346923 (25 bp)
AATATGCTGAGCTTCACTGTGCAGA
LOC_Os05g13300
Os.54253.1.S1_at--363--2531Chr05:7346762..7346786 (25 bp)
AACTTATATTCCTGGTGTTCTCCAT
NONE
Os.54253.1.S1_at--245--1991Chr05:7346727..7346751 (25 bp)
ACTGCTGCTGACTTAGGAACTGCCA
NONE
Os.54253.1.S1_at--387--8171Chr05:7346712..7346736 (25 bp)
GGAACTGCCAAGCTTAGCCACATGG
NONE
Os.54253.1.S1_at--184--7831Chr05:7346677..7346701 (25 bp)
GGTACCCTAAATGATTGAGCCGTTT
NONE
Target Sequence 
CTACTGACAAACTACCCCAATGGATAAAAACACGACTTGCTTGTGCTCAAAATTATGGAGAGGTTCATAGATTGTTGCAC
CAGTTCTTCAAACTCAACAGGCAAACGCATTGAATAATTACAGATCACACGGTTTCAGAACAGTTCATAAAAGCAAACAC
ATACAGAGCTAAAGCACAGTTAACTCATTTGATTTAGTCTGCTGATTTTCCAAATATCGAGAATAAGCTTCAATGCTTTT
CCTAACGCATCGCAACAGGATTCAGGACGATCAAGCTTCACTTATTGAATATGCTGAGCTTCACTGTGCAGAACATGTTT
GGGGTTGAGCTGTAAAAGTGACCTGAATGCAGTTGCTAACTGATTCGATAAGATGGAGCTTCATGTAGATATATTTTGTG
GACACGGTTTGTTCGTAAGTAATGAACTTATATTCCTGGTGTTCTCCATTTAATTAAGTACTGCTGCTGACTTAGGAACT
GCCAAGCTTAGCCACATGGGGTGTTTTACGGTACCCTAAATGATTGAGCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis