Browse Element(s) Details


Os.54557.1.S1_at

Description gb:AK105641.1
DB_XREF= gi:32990850
TID=Os.54557.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E08, full insert sequence.
FL= gb:AK105641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3372010/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein
LOC_Os06g33710Os.4600.1.S1_at10/116+19613317..19618692Spermidine synthase 2, putative, expressed
LOC_Os06g33720Os.54557.1.S1_at10/116+19618926..19620613Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g33730OsAffx.4994.1.S1_at11/116+19627998..19628393hypothetical protein
LOC_Os06g33739Os.10731.2.A1_at1/116+19633177..19634533retrotransposon protein, putative, unclassified
LOC_Os06g33750NANA6+19636471..19641628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33759Os.10731.2.A1_at1/116+19642415..19643771retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54557.1.S1_at--870--10591Chr06:19619352..19619376 (25 bp)
TTCTGCGAGCGCAGCTGCGGCTTCC
LOC_Os06g33720
Os.54557.1.S1_at--779--2891Chr06:19619307..19619331 (25 bp)
AAGGAGCTCATATGGACGTCCATCA
LOC_Os06g33720
Os.54557.1.S1_at--1056--9031Chr06:19619120..19619144 (25 bp)
TGCAGCCGGTGCAGGCCAATCAGGC
LOC_Os06g33720
Os.54557.1.S1_at--1066--8451Chr06:19619090..19619114 (25 bp)
TGGCCTCTCCACTGGGCTTTATCAA
LOC_Os06g33720
Os.54557.1.S1_at--712--8651Chr06:19619078..19619102 (25 bp)
TGGGCTTTATCAATTCAGCGTAATA
LOC_Os06g33720
Os.54557.1.S1_at--303--131Chr06:19619066..19619090 (25 bp)
ATTCAGCGTAATACTCCACTGTGTA
LOC_Os06g33720
Os.54557.1.S1_at--753--3091Chr06:19619057..19619081 (25 bp)
AATACTCCACTGTGTATTGCTCGCT
LOC_Os06g33720
Os.54557.1.S1_at--534--6871Chr06:19619044..19619068 (25 bp)
GTATTGCTCGCTCGGCTCGTAAATA
LOC_Os06g33720
Os.54557.1.S1_at--644--9411Chr06:19619033..19619057 (25 bp)
TCGGCTCGTAAATATTTCGCGGTTT
LOC_Os06g33720
Os.54557.1.S1_at--666--2451Chr06:19618941..19618965 (25 bp)
AACAATTCGTAGTTTGATATTCATG
LOC_Os06g33720
Os.54557.1.S1_at--622--6511Chr06:19618926..19618950 (25 bp)
GATATTCATGAGTATATTCGTGTTC
NONE
Target Sequence 
TTCTGCGAGCGCAGCTGCGGCTTCCCGCGGCTGGAGGAGTGGGAGAAGGAGCTCATATGGACGTCCATCACCGCCATGCG
CGACGACCTCGAGTCCTTCCGCGACGACTTCCGCGTCACCGACCTCGTCGCCGACGGCCTGCGCCGCCACGGCTGGATCC
TGGCGCCGGCGCCGGAGCCGGAGCCACTGCGCCAGGAGGACGTCGTCGCCGGCGACGGCGAGGGAGAAGGCGTGCAGCCG
GTGCAGGCCAATCAGGCGGCCGTGGCCTCTCCACTGGGCTTTATCAATTCAGCGTAATACTCCACTGTGTATTGCTCGCT
CGGCTCGTAAATATTTCGCGGTTTGGATAAAATTTGGTCAAATTTAACTTTCCAAACATTTGTTGTATAATTTCTCAAAT
CCTTAGTTTAAAACAATTCGTAGTTTGATATTCATGAGTATATTCGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis