Browse Element(s) Details


Os.54562.1.S1_at

Description gb:AK105740.1
DB_XREF= gi:32990949
TID=Os.54562.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A06, full insert sequence.
FL= gb:AK105740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6993011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54562.1.S1_at--216--631Chr01:40768733..40768757 (25 bp)
ATGCTGCGATTTTCTCACCAGGTGC
LOC_Os01g69930
Os.54562.1.S1_at--323--9191Chr01:40768755..40768779 (25 bp)
TGCCATTCCATGTCCTTACTGGAGA
LOC_Os01g69930
Os.54562.1.S1_at--580--3171Chr01:40768812..40768836 (25 bp)
AATTGGATCCTGGTTCTACTCCGAA
LOC_Os01g69930
Os.54562.1.S1_at--105--6651Chr01:40768850..40768874 (25 bp)
GTTGTTCCACAATCTGACGGCGTAT
LOC_Os01g69930
Os.54562.1.S1_at--443--2251Chr01:40768876..40768900 (25 bp)
AAATAAGTCCCGTAGCTGATGCTGA
LOC_Os01g69930
Os.54562.1.S1_at--306--3711Chr01:40768903..40768927 (25 bp)
CTAGCTCTAGCTTGTACTTAGTGGC
LOC_Os01g69930
Os.54562.1.S1_at--1053--7532Chr04:31039476..31039559 (25 bp)
GTGGCTGAACTATTTTTTCGCTTTT
NONE
Os.54562.1.S1_at--91--6932Chr01:40769023..40769047 (25 bp)
GTATGTTTTGACCTGTAAGCTCCCC
LOC_Os01g69930
Os.54562.1.S1_at--801--2691Chr01:40769039..40769063 (25 bp)
AAGCTCCCCATGTTGTTTTGATGTA
LOC_Os01g69930
Os.54562.1.S1_at--814--4751Chr01:40769169..40769193 (25 bp)
GCTGACCTGTTGTTGTGCATGGAGT
LOC_Os01g69930
Os.54562.1.S1_at--769--6251Chr01:40769198..40769222 (25 bp)
GATGGTCGTCACAGTTGGCCGAGAT
LOC_Os01g69930
Target Sequence 
ATGCTGCGATTTTCTCACCAGGTGCCATTCCATGTCCTTACTGGAGAAGAAGCTAAGAATTCTCCCAAGGGATGCTATGA
ATTGGATCCTGGTTCTACTCCGAAGGAACTTCTTCAAGTTGTTCCACAATCTGACGGCGTATAAAATAAGTCCCGTAGCT
GATGCTGATGCTAGCTCTAGCTTGTACTTAGTGGCTGAACTATTTTTTCGCTTTTTTATATCCTGGAATCATTGGGGTAA
TACCGGTTTCTTTAGTATTGTACAATACTACAATACATACCCAATGCTGTGTATGTTTTGACCTGTAAGCTCCCCATGTT
GTTTTGATGTATTAGTAAACATGGCTATCTGTAAGTTCCTAGATATTTCTGGCCAGTTAGCCATATTATTATTTCTTGAT
GTTTCTCATCAAGAGCAGTAGAAACTTTAGAATATTGCTGACCTGTTGTTGTGCATGGAGTTGGTGATGGTCGTCACAGT
TGGCCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis