Browse Element(s) Details


Os.54629.1.S1_at

Description gb:AK106306.1
DB_XREF= gi:32991515
TID=Os.54629.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C10, full insert sequence.
FL= gb:AK106306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1295011/11ANT, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54629.1.S1_at--1142--6291Chr03:6972428..6972452 (25 bp)
GATGAGGCCGCCGAGTGCCATTGCT
LOC_Os03g12950
Os.54629.1.S1_at--957--6811Chr03:6972394..6972418 (25 bp)
GTTTTTGCAGCCTGGACAGATGCTT
LOC_Os03g12950
Os.54629.1.S1_at--511--9751Chr03:6972370..6972394 (25 bp)
TAATTAGAGCCATGTTGCTGCTTGC
LOC_Os03g12950
Os.54629.1.S1_at--176--3851Chr03:6972353..6972377 (25 bp)
CTGCTTGCTCGATCTTGCTTTTGAT
LOC_Os03g12950
Os.54629.1.S1_at--744--10251Chr03:6972334..6972358 (25 bp)
TTTGATCGGCTCTTTTTGTAAACTA
LOC_Os03g12950
Os.54629.1.S1_at--569--3191Chr03:6972294..6972318 (25 bp)
CAATCAGGTGCTTATGGTACTTAAA
LOC_Os03g12950
Os.54629.1.S1_at--753--4711Chr03:6972266..6972290 (25 bp)
GCTGGAAGCCTGGAGTAGCATACTT
LOC_Os03g12950
Os.54629.1.S1_at--933--9491Chr03:6972159..6972183 (25 bp)
TCTCTAGAGCATCCACTGGTAGTAG
LOC_Os03g12950
Os.54629.1.S1_at--143--6951Chr03:6972132..6972156 (25 bp)
GTAGTAGACCTTTAGTGTTAGACCG
LOC_Os03g12950
Os.54629.1.S1_at--56--7431Chr03:6972118..6972142 (25 bp)
GTGTTAGACCGGTAGTGTTCTTTGC
LOC_Os03g12950
Os.54629.1.S1_at--371--3331Chr03:6972010..6972034 (25 bp)
CACGAAATCTGGCTGTGGCATTAAA
LOC_Os03g12950
Target Sequence 
GATGAGGCCGCCGAGTGCCATTGCTCATCTCCCTGTTTTTGCAGCCTGGACAGATGCTTAATTAGAGCCATGTTGCTGCT
TGCTCGATCTTGCTTTTGATCGGCTCTTTTTGTAAACTAAAGCAAGATCAGCAGCAATCAGGTGCTTATGGTACTTAAAT
TAGCTGGAAGCCTGGAGTAGCATACTTGGTTATGATGGTAAGCACTAGGCTGGTGGTGTAAGTGTTTAACCAGTAAACCC
ATAGGTAGGACATTCAAGCAAAATCCAAATCTCTAGAGCATCCACTGGTAGTAGTAGTAGTAGACCTTTAGTGTTAGACC
GGTAGTGTTCTTTGCTTCTTTTGAGCCTCTTTTTTTGGGGGAAATTTGGTTGGAATGTATGGCTTTTTAACACGAAATCA
GGAATGTATGGCTTTTAACACGAAATCTGGCTGTGGCATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis