Browse Element(s) Details


OsAffx.3217.1.S1_at

Description tigr:9631.m01225
TID=OsAffx.3217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1296011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3217.1.S1_at--1128--1931Chr03:6983275..6983298 (24 bp)
ACGGCTCGACGCTGCGCTGGCCAGA
LOC_Os03g12960
OsAffx.3217.1.S1_at--528--9351Chr03:6983192..6983293 (25 bp)
TCGACGCTGCGCTGGCCAGAAACGT
LOC_Os03g12960
OsAffx.3217.1.S1_at--625--4751Chr03:6983187..6983288 (25 bp)
GCTGCGCTGGCCAGAAACGTTTGCT
LOC_Os03g12960
OsAffx.3217.1.S1_at--511--4131Chr03:6983183..6983284 (25 bp)
CGCTGGCCAGAAACGTTTGCTCTAA
LOC_Os03g12960
OsAffx.3217.1.S1_at--531--8431Chr03:6983179..6983199 (21 bp)
GGCCAGAAACGTTTGCTCTAATGCA
LOC_Os03g12960
OsAffx.3217.1.S1_at--330--5551Chr03:6983174..6983198 (25 bp)
GAAACGTTTGCTCTAATGCAGTCAT
LOC_Os03g12960
OsAffx.3217.1.S1_at--638--6851Chr03:6983169..6983193 (25 bp)
GTTTGCTCTAATGCAGTCATCTTTA
LOC_Os03g12960
OsAffx.3217.1.S1_at--368--5031Chr03:6983157..6983181 (25 bp)
GCAGTCATCTTTAAACACCTACCAT
LOC_Os03g12960
OsAffx.3217.1.S1_at--646--9511Chr03:6983153..6983177 (25 bp)
TCATCTTTAAACACCTACCATTACC
LOC_Os03g12960
OsAffx.3217.1.S1_at--158--9811Chr03:6983146..6983170 (25 bp)
TAAACACCTACCATTACCAACAACG
LOC_Os03g12960
OsAffx.3217.1.S1_at--800--1711Chr03:6983137..6983161 (25 bp)
ACCATTACCAACAACGCCTCTACTT
LOC_Os03g12960
Target Sequence 
ACGGCTCGACGCTGCGCTGGCCAGAAACGTTTGCTCTAATGCAGTCATCTTTAAACACCTACCATTACCAACAACGCCTC
TACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis