Browse Element(s) Details


Os.8251.1.S1_at

Description gb:AK068218.1
DB_XREF= gi:32978236
TID=Os.8251.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146E12, full insert sequence.
FL= gb:AK068218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1301011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8251.1.S1_at--124--10251Chr03:7008823..7008847 (25 bp)
TTTGGAATTGTGCTGTTCCGCTTGT
LOC_Os03g13010
Os.8251.1.S1_at--46--6711Chr03:7008809..7008833 (25 bp)
GTTCCGCTTGTGATTTGGTCGATGG
LOC_Os03g13010
Os.8251.1.S1_at--992--5271Chr03:7008783..7008807 (25 bp)
GAATGGTTCACCTGTTGGGTCTCAC
LOC_Os03g13010
Os.8251.1.S1_at--523--3451Chr03:7008724..7008748 (25 bp)
CAGTCGACAGCGTCTATGTATAGAT
LOC_Os03g13010
Os.8251.1.S1_at--220--6611Chr03:7008635..7008659 (25 bp)
GATTGTGAGACCTGTGGCCATGTTA
LOC_Os03g13010
Os.8251.1.S1_at--817--8431Chr03:7008620..7008644 (25 bp)
GGCCATGTTATCACTGTCCAGCGAG
LOC_Os03g13010
Os.8251.1.S1_at--67--7071Chr03:7008469..7008493 (25 bp)
GTAAGTACAGCCAGTTTTGCCATTG
LOC_Os03g13010
Os.8251.1.S1_at--450--2631Chr03:7008422..7008446 (25 bp)
AACCTGCTGTTTTAGATTTTCGGCA
LOC_Os03g13010
Os.8251.1.S1_at--379--5191Chr03:7008400..7008424 (25 bp)
GCAATGTGGGTCTTTCAGGGCTGTA
LOC_Os03g13010
Os.8251.1.S1_at--723--3451Chr03:7008385..7008409 (25 bp)
CAGGGCTGTAGATGTTCTTCCTTTT
LOC_Os03g13010
Os.8251.1.S1_at--1052--10651Chr03:7008368..7008392 (25 bp)
TTCCTTTTTCTCATCTTCGGTGTAA
LOC_Os03g13010
Target Sequence 
TTTGGAATTGTGCTGTTCCGCTTGTGATTTGGTCGATGGTGAATGGTTCACCTGTTGGGTCTCACATAATCTGAAGAAAT
GGCAGCAATTAGCAATTGGCAGTCGACAGCGTCTATGTATAGATAAACTTTGCAGTTATGCAGAATTTGCCATGTCATCT
GATGGCATAAGGGTGGATGATATGAGTAGATTGTGAGACCTGTGGCCATGTTATCACTGTCCAGCGAGATGATGCGTATC
GCAGCATTCAAAATGCAGCATACACACAGCTAATTCAGTGGCAAGCAGGTGGGATGTACATGCAAATTGATGAGGATTTT
GGTCAGCTCAATAAGCACTCGAGGCTGGGAGGTGGTAAGTACAGCCAGTTTTGCCATTGGTAGTAGAAAAATTAAGCAAG
AAACCTGCTGTTTTAGATTTTCGGCAATGTGGGTCTTTCAGGGCTGTAGATGTTCTTCCTTTTTCTCATCTTCGGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis