Browse Element(s) Details


Os.23343.1.A1_at

Description gb:CA759301
DB_XREF= gi:25803340
DB_XREF=BR060012A20D10.ab1
CLONE=BR060012A20D10.ab1
TID=Os.23343.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23343 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195483.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1304011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23343.1.A1_at--826--4291Chr03:7029618..7029642 (25 bp)
CCTCTCGATTGATTGTGCGGTTGAA
LOC_Os03g13040
Os.23343.1.A1_at--276--7311Chr03:7029604..7029628 (25 bp)
GTGCGGTTGAATTTCCTGTCATGTG
LOC_Os03g13040
Os.23343.1.A1_at--1086--7851Chr03:7029572..7029596 (25 bp)
GGTTAAGTTGTTCATTGCACGGGTA
LOC_Os03g13040
Os.23343.1.A1_at--1141--8671Chr03:7029530..7029554 (25 bp)
TGTGACATCGATTTCTTTCATGGAT
LOC_Os03g13040
Os.23343.1.A1_at--132--1271Chr03:7029471..7029495 (25 bp)
AGATCGGGCGTTCGAAACATCTCTT
LOC_Os03g13040
Os.23343.1.A1_at--160--2411Chr03:7029457..7029481 (25 bp)
AAACATCTCTTGTCTGCTTGTGGAT
LOC_Os03g13040
Os.23343.1.A1_at--331--2071Chr03:7029393..7029417 (25 bp)
ACATATTTCTTCTGGCATTGGGTAT
LOC_Os03g13040
Os.23343.1.A1_at--77--3071Chr03:7029358..7029382 (25 bp)
AATCTTGAAATATTAGGCTGCCCTC
LOC_Os03g13040
Os.23343.1.A1_at--1013--3811Chr03:7029341..7029365 (25 bp)
CTGCCCTCAAAATATCTAGCCATTC
LOC_Os03g13040
Os.23343.1.A1_at--979--3871Chr03:7029317..7029341 (25 bp)
CTGTAGATTTTTGCTCTTGTGCTTA
LOC_Os03g13040
Os.23343.1.A1_at--268--8411Chr03:7029218..7029242 (25 bp)
GGCCAAGGCTTACAGTTTCTAAACA
LOC_Os03g13040
Target Sequence 
CCTCTCGATTGATTGTGCGGTTGAATTTCCTGTCATGTGAGAAGGAGGTTAAGTTGTTCATTGCACGGGTAATGCGGTGG
AAAGGAGATGTGACATCGATTTCTTTCATGGATGGATCTGTTATACGGAGCAAAGAAATTGGTCTATAGATCGGGCGTTC
GAAACATCTCTTGTCTGCTTGTGGATGCTATAGCTTTATGTTTCAGGCTGGATAAATCCCATACAACATATTTCTTCTGG
CATTGGGTATTTGAAGTCTGAATCTTGAAATATTAGGCTGCCCTCAAAATATCTAGCCATTCTGTAGATTTTTGCTCTTG
TGCTTATTTACTAATTTATTTATTTATTTTATTTGAATATTCTCAATAGTGCATAGTTTTGTAGTTGTGTAAATTAGGGA
GGCCAAGGCTTACAGTTTCTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23343.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis