Browse Element(s) Details


Os.50391.1.S1_at

Description gb:AK121004.1
DB_XREF= gi:37990627
TID=Os.50391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045D13, full insert sequence.
FL= gb:AK121004.1 gb:AK060669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1303011/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50391.1.S1_at--916--6771Chr03:7023049..7023073 (25 bp)
GTTAGCAGCATAGAGGTACACAGGA
LOC_Os03g13030
Os.50391.1.S1_at--242--5971Chr03:7023022..7023046 (25 bp)
GAGAAAATCTTCTCTTTTCTGAATA
LOC_Os03g13030
Os.50391.1.S1_at--620--5211Chr03:7022992..7023016 (25 bp)
GAATTTACAATTCCTGTGCCACTAG
LOC_Os03g13030
Os.50391.1.S1_at--747--3151Chr03:7022984..7023008 (25 bp)
AATTCCTGTGCCACTAGGATGGTGA
LOC_Os03g13030
Os.50391.1.S1_at--1046--7271Chr03:7022977..7023001 (25 bp)
GTGCCACTAGGATGGTGATGTCCAT
LOC_Os03g13030
Os.50391.1.S1_at--901--7751Chr03:7022964..7022988 (25 bp)
GGTGATGTCCATATGTCATTACTGA
LOC_Os03g13030
Os.50391.1.S1_at--1099--8711Chr03:7022951..7022975 (25 bp)
TGTCATTACTGATCCGTGCAAATAA
LOC_Os03g13030
Os.50391.1.S1_at--449--9911Chr03:7022945..7022969 (25 bp)
TACTGATCCGTGCAAATAAATAATA
LOC_Os03g13030
Os.50391.1.S1_at--493--291Chr03:7022923..7022947 (25 bp)
ATAGCAATAATTTTGGCTGCTGTAA
LOC_Os03g13030
Os.50391.1.S1_at--425--10411Chr03:7022913..7022937 (25 bp)
TTTTGGCTGCTGTAAGTAGGCAATT
LOC_Os03g13030
Os.50391.1.S1_at--179--6471Chr03:7022898..7022922 (25 bp)
GTAGGCAATTTATGGGTGACTAGAA
LOC_Os03g13030
Target Sequence 
GTTAGCAGCATAGAGGTACACAGGAAAGAGAAAATCTTCTCTTTTCTGAATAATTTTGAATTTACAATTCCTGTGCCACT
AGGATGGTGATGTCCATATGTCATTACTGATCCGTGCAAATAAATAATAGCAATAATTTTGGCTGCTGTAAGTAGGCAAT
TTATGGGTGACTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis