Browse Element(s) Details


OsAffx.12838.1.S1_at

Description tigr:9631.m01234
TID=OsAffx.12838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1306011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12838.1.S1_at--1122--4452Chr03:7043414..7043438 (25 bp)
GCCTCGTTCCTCTTTGGATGGGAAA
LOC_Os03g13060
OsAffx.12838.1.S1_at--1072--8951Chr03:7043442..7043466 (25 bp)
TGACAAAATGTATCCCATCCCGATG
LOC_Os03g13060
OsAffx.12838.1.S1_at--692--4052Chr03:7044506..7044526 (21 bp)
CGATGCTTCGGTGCGAATCTCTGAA
LOC_Os03g13060
OsAffx.12838.1.S1_at--312--3053Chr03:7044517..7044541 (25 bp)
AATCTCTGAAGCATCGGCTTCCCCG
LOC_Os03g13060
OsAffx.12838.1.S1_at--943--8371Chr03:7044579..7044603 (25 bp)
GGCGACAATCATCGACCTTGGGCCG
LOC_Os03g13060
OsAffx.12838.1.S1_at--636--413Chr03:7044586..7044610 (25 bp)
ATCATCGACCTTGGGCCGGACGCGA
LOC_Os03g13060
OsAffx.12838.1.S1_at--681--7392Chr03:7044649..7044673 (25 bp)
GTGTTGACCCAGTCGTCGGCGACGT
LOC_Os03g13060
OsAffx.12838.1.S1_at--145--5772Chr03:7044669..7044693 (25 bp)
GACGTCGCACTGGTCGCGAATGAAA
LOC_Os03g13060
OsAffx.12838.1.S1_at--633--5271Chr03:7044686..7044710 (25 bp)
GAATGAAACTCTCGGTCCTGGTGAA
LOC_Os03g13060
OsAffx.12838.1.S1_at--438--2012Chr03:7044693..7044717 (25 bp)
ACTCTCGGTCCTGGTGAAGAGCATC
LOC_Os03g13060
OsAffx.12838.1.S1_at--1073--5911Chr03:7044711..7044735 (25 bp)
GAGCATCGCAACGATGCCGAACCGG
LOC_Os03g13060
Target Sequence 
GCCTCGTTCCTCTTTGGATGGGAAAGGTTGACAAAATGTATCCCATCCCGATGCTTCGGTGCGAATCTCTGAAGCATCGG
CTTCCCCGCGACGGCGGCGCCGGACAGGACTCCGCCGAGGATGCCGGCGACAATCATCGACCTTGGGCCGGACGCGATGC
GGTAGAGCGCCCCGGCGCTGGCCCCCGCGGCGACGGTGTTGACCCAGTCGTCGGCGACGTCGCACTGGTCGCGAATGAAA
CTCTCGGTCCTGGTGAAGAGCATCGCAACGATGCCGAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis