Browse Element(s) Details


Os.53451.1.S1_at

Description gb:AK072709.1
DB_XREF= gi:32982732
TID=Os.53451.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138G24, full insert sequence.
FL= gb:AK072709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1304011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53451.1.S1_at--312--1431Chr03:7026600..7026624 (25 bp)
AGAACCCTGAGTTTCGGACCATACG
LOC_Os03g13040
Os.53451.1.S1_at--10--4671Chr03:7026543..7026567 (25 bp)
GCGTGATCCCTGTCATTCACAAATT
LOC_Os03g13040
Os.53451.1.S1_at--1074--2231Chr03:7026523..7026547 (25 bp)
AAATTGATCCTCTTTTGGCACCAAC
LOC_Os03g13040
Os.53451.1.S1_at--145--1331Chr03:7026497..7026521 (25 bp)
AGAGGCATTGCACACTACCGCATAT
LOC_Os03g13040
Os.53451.1.S1_at--450--691Chr03:7026474..7026498 (25 bp)
ATGAGGTTCTGATGGGCCTTTTCTA
LOC_Os03g13040
Os.53451.1.S1_at--773--1951Chr03:7026437..7026461 (25 bp)
ACTGGTGTATGCAACTCGGGTGCCC
LOC_Os03g13040
Os.53451.1.S1_at--358--311Chr03:7026375..7026399 (25 bp)
ATAGCCACCAGCTTTTTCATGTGTT
LOC_Os03g13040
Os.53451.1.S1_at--961--8071Chr03:7026340..7026364 (25 bp)
GGAGCATACACACACTATCATTCTG
LOC_Os03g13040
Os.53451.1.S1_at--26--10171Chr03:7026325..7026349 (25 bp)
TATCATTCTGGACTGGTATACCTCA
LOC_Os03g13040
Os.53451.1.S1_at--824--6491Chr03:7026247..7026271 (25 bp)
GATAGATTGTAGGTGCCCTGCTTGT
LOC_Os03g13040
Os.53451.1.S1_at--880--6571Chr03:7026201..7026225 (25 bp)
GATTCTCTCTCGTCTTCAGAAACAA
LOC_Os03g13040
Target Sequence 
AGAACCCTGAGTTTCGGACCATACGAGCATGCCTCTTCTTTGGCATGGGTGCATCCGGCGTGATCCCTGTCATTCACAAA
TTGATCCTCTTTTGGCACCAACCAGAGGCATTGCACACTACCGCATATGAGGTTCTGATGGGCCTTTTCTATGGCATTGG
GGCACTGGTGTATGCAACTCGGGTGCCCGAGCGCTGGATGCCTGGAAAATTTGACATTGCTGGTCATAGCCACCAGCTTT
TTCATGTGTTAGTTGTTGCTGGAGCATACACACACTATCATTCTGGACTGGTATACCTCAAGTGGAGAGACGTGCAAGGC
TGCTAGAAATTATCTGTGTGCTCGTAGGATGTGGATAGATTGTAGGTGCCCTGCTTGTGTCCCGAAANAGAGGACCGCTG
ATTCTCTCTCGTCTTCAGAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis