Browse Element(s) Details


Os.54679.1.S1_at

Description gb:AK106458.1
DB_XREF= gi:32991667
TID=Os.54679.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G02, full insert sequence.
FL= gb:AK106458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1025011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein
LOC_Os11g10220NANA11+5542304..5543858retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10230Os.2987.3.S1_x_at1/1111+5545600..5548415retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g10240Os.52549.1.S1_s_at11/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10240Os.52549.1.S1_at9/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10250Os.54679.1.S1_at11/1111+5558304..5563759expressed protein
LOC_Os11g10250OsAffx.18779.1.S1_at10/1111+5558304..5563759expressed protein
LOC_Os11g10250Os.52549.1.S1_s_at1/1111+5558304..5563759expressed protein
LOC_Os11g10260NANA11+5564981..5572514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10270NANA11+5573437..5574183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54679.1.S1_at--1131--3633Chr12:18599300..18599322 (23 bp)
CTACCCCTAGACACTTATACTTACT
NONE
Os.54679.1.S1_at--91--851Chr11:5561434..5561458 (25 bp)
ATGGCTACTTATTCCCCTTCATTTT
LOC_Os11g10250
Os.54679.1.S1_at--943--6771Chr11:5561351..5561375 (25 bp)
GTTACCTTGTTGATTGATCCACCCA
LOC_Os11g10250
Os.54679.1.S1_at--763--8851Chr11:5561337..5561361 (25 bp)
TGATCCACCCATCTGTGCATTATAA
LOC_Os11g10250
Os.54679.1.S1_at--642--5331Chr11:5561220..5561244 (25 bp)
GAAGTACCTCTCTTAATTATTCAGG
LOC_Os11g10250
Os.54679.1.S1_at--414--951Chr11:5561168..5561192 (25 bp)
AGGAACTCTCGTCTTTTTTCTATGA
LOC_Os11g10250
Os.54679.1.S1_at--100--6031Chr11:5561145..5561169 (25 bp)
GAGATCCTATGTTAGTTCCACTAGC
LOC_Os11g10250
Os.54679.1.S1_at--620--4471Chr11:5561081..5561105 (25 bp)
GCCTGCAGCTGGTTATTCATTTTAT
LOC_Os11g10250
Os.54679.1.S1_at--916--1151Chr11:5561045..5561069 (25 bp)
AGTCTTGACTTCTTAGCTTTCTGCA
LOC_Os11g10250
Os.54679.1.S1_at--161--3351Chr11:5561022..5561046 (25 bp)
CACGTGTCTGTGCATTTCGCTAATG
LOC_Os11g10250
Os.54679.1.S1_at--867--1191Chr11:5560975..5560999 (25 bp)
AGTATATGCCACTTACTACTTGGAA
LOC_Os11g10250
Target Sequence 
CTACCCCTAGACACTTATACTTACTAATAAATTGTACATGTTAAGTGACATTTATGGCTACTTATTCCCCTTCATTTTTG
AAAATTGATGATTCCTCCGTAATTATCTTTGGAGTTTGGAAATTCATTTGGTATTGGTTACCTTGTTGATTGATCCACCC
ATCTGTGCATTATAAAACTTATTATTGTACTCTAGTACATATTGTTGCAGTCTTCAGTTTCGAGGAAGAAGATATGGGTT
CAGATCTTGAGGAAGAATCTTCTACGTGAAGTACCTCTCTTAATTATTCAGGACAGCAAGGCTTTAATTTTGCAGTGACA
GGAACTCTCGTCTTTTTTCTATGAGATCCTATGTTAGTTCCACTAGCAGGAACAATTCAGACAGAATTGACCGTCTAGCT
GTTGGAGCCTGCAGCTGGTTATTCATTTTATCCTTTTAAGACAGTCTTGACTTCTTAGCTTTCTGCACGTGTCTGTGCAT
TTCGCTAATGTTCTAAGAACATTATAATGCGTAGTATATGCCACTTACTACTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis