Browse Element(s) Details


Os.54851.1.S1_at

Description gb:AK106906.1
DB_XREF= gi:32992115
TID=Os.54851.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A01, full insert sequence.
FL= gb:AK106906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4605011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46079NANA5+26646611..26647236NA
LOC_Os05g46090OsAffx.15120.1.S1_at11/115+26649139..26652880Leucine Rich Repeat family protein
LOC_Os05g46100OsAffx.27336.1.S1_at11/115+26654579..26654863hypothetical protein
LOC_Os05g46110Os.1924.1.S1_at1/115+26656128..26659454retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54851.1.S1_at--969--7211Chr05:26632237..26632261 (25 bp)
GTCGAGGTGCTTGAGCACACCTGGA
LOC_Os05g46050
Os.54851.1.S1_at--459--3311Chr05:26632252..26632276 (25 bp)
CACACCTGGAGCGAGATTGACGAGC
LOC_Os05g46050
Os.54851.1.S1_at--943--8791Chr05:26632415..26632439 (25 bp)
TGTTCGATCACACCTACCATTGCTG
LOC_Os05g46050
Os.54851.1.S1_at--334--2271Chr05:26632459..26632483 (25 bp)
AAATCACCGTTCAATGTCGATCGCC
LOC_Os05g46050
Os.54851.1.S1_at--38--5891Chr05:26632492..26632516 (25 bp)
GAGCGAGGCCGGTCGAAAATCTCTC
LOC_Os05g46050
Os.54851.1.S1_at--900--5511Chr05:26632506..26632530 (25 bp)
GAAAATCTCTCCTCCGGTTTGGATT
LOC_Os05g46050
Os.54851.1.S1_at--754--3051Chr05:26632610..26632634 (25 bp)
AATCTGAGTTCGATGGTGTTCTCGT
LOC_Os05g46050
Os.54851.1.S1_at--1094--7411Chr05:26632625..26632649 (25 bp)
GTGTTCTCGTGTTCAAATTGTTGCT
LOC_Os05g46050
Os.54851.1.S1_at--73--3131Chr05:26632666..26632690 (25 bp)
AATTTGCCTGCATTTCTTTGTGGTG
LOC_Os05g46050
Os.54851.1.S1_at--907--1431Chr05:26632704..26632728 (25 bp)
AGAACCCGTTTAGTGCTGAATTGCT
LOC_Os05g46050
Os.54851.1.S1_at--308--4851Chr05:26632726..26632750 (25 bp)
GCTACAGACGATACTTGCCGTTGAT
LOC_Os05g46050
Target Sequence 
GTCGAGGTGCTTGAGCACACCTGGAGCGAGATTGACGAGCTCGGCGGCAGGATGCTGTTCCTCGGGCGAGGCTGCTCCAG
ATCCTACGAGGAGGCCGATGGGTATCCCGGCATGGAGGGCGTCTACTTCTTGGATGACCGGAGCTTCCGTGACCCGATCT
TCCACGACCCGGACATGGTGTTCGATCACACCTACCATTGCTGCGACAATGGCAGATGGTAGAAATCACCGTTCAATGTC
GATCGCCGCTTCCCGGAGCGAGGCCGGTCGAAAATCTCTCCTCCGGTTTGGATTCTCCCTTGAAGAAATTAACGAACAGG
GGTTAGTTCAACAGGTCAAGTTAGTTTGTGATTGTTTGTTTCTTCTTTCTGAGAATCTGAGTTCGATGGTGTTCTCGTGT
TCAAATTGTTGCTGATTAGTAGTAGATATAATTTGCCTGCATTTCTTTGTGGTGCAAAGCTGAAGGCAGAACCCGTTTAG
TGCTGAATTGCTACAGACGATACTTGCCGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis