Browse Element(s) Details


Os.54915.1.S1_at

Description gb:AK107093.1
DB_XREF= gi:32992302
TID=Os.54915.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H04, full insert sequence.
FL= gb:AK107093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g190409/11B-cell receptor-associated protein 31-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19000Os.5881.1.S1_at2/115+11004994..11007169expressed protein
LOC_Os05g19010Os.56962.1.S1_at11/115+11008445..11009200expressed protein
LOC_Os05g19020NANA5+11012876..11014091retrotransposon protein, putative, unclassified
LOC_Os05g19030Os.5881.1.S1_at11/115+11021940..11024991expressed protein
LOC_Os05g19040Os.54915.1.S1_at9/115+11028518..11031728B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os05g19050OsAffx.14758.1.S1_at10/115+11034946..11040871hypothetical protein
LOC_Os05g19060OsAffx.14433.1.S1_at1/115+11043698..11045244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19080Os.53479.1.S1_x_at1/115+11052502..11055364hypothetical protein
LOC_Os05g19090OsAffx.10632.1.S1_at1/115+11056119..11058875retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54915.1.S1_at--910--8271NONE
GGCATCCCTCATGGGATACTCTCTG
NONE
Os.54915.1.S1_at--787--6471Chr05:11028979..11029003 (25 bp)
GATACTCTCTGTTTCTTGGGTTAAT
LOC_Os05g19040
Os.54915.1.S1_at--770--7671Chr05:11028962..11028986 (25 bp)
GGGTTAATTATTGACCGGCTACATC
LOC_Os05g19040
Os.54915.1.S1_at--357--5831Chr05:11028950..11028974 (25 bp)
GACCGGCTACATCACTATATCAGGG
LOC_Os05g19040
Os.54915.1.S1_at--699--10191Chr05:11028935..11028959 (25 bp)
TATATCAGGGAGTTACGGACCATGA
LOC_Os05g19040
Os.54915.1.S1_at--467--7051Chr05:11028893..11028917 (25 bp)
GTAACAAAGCAGAGCAGGACCTTAG
LOC_Os05g19040
Os.54915.1.S1_at--131--5411Chr05:11028743..11028767 (25 bp)
GAAGCGAATACCTTGGCTTTACAGA
LOC_Os05g19040
Os.54915.1.S1_at--886--6191Chr05:11028668..11028692 (25 bp)
GAGGAATTCAGGAACCAACTGCAGT
LOC_Os05g19040
Os.54915.1.S1_at--53--2651Chr05:11028656..11028680 (25 bp)
AACCAACTGCAGTCAATGGACCTCC
LOC_Os05g19040
Os.54915.1.S1_at--863--3711Chr05:11028596..11028620 (25 bp)
CTACACAACTGTGATGCTGGCATGT
LOC_Os05g19040
Os.54915.1.S1_at--970--231Chr05:11028506..11028530 (25 bp)
ATATATCGCTGTGTGTGGATAAGCA
NONE
Target Sequence 
GGCATCCCTCATGGGATACTCTCTGTTTCTTGGGTTAATTATTGACCGGCTACATCACTATATCAGGGAGTTACGGACCA
TGAAGAAAAACATGGAGGCTGTAACAAAGCAGAGCAGGACCTTAGAAGAAGCAAAACATGGGAGTGTAGAGGAGATTCAA
CAATATCAGAAAGAGATTTCCAGGTTGAATGAGCAAGTGCAAGAATTCAAGCGNCTGTCAGAAACGAAAACTGAGGAACT
AAAAACAGCTGAAGCGAATACCTTGGCTTTACAGAAGCAATCTGAAGGTTTGCTTNCCGAGTATGAGCNTCTCATCGCAG
AGAATGAGGAATTCAGGAACCAACTGCAGTCAATGGACCTCCNCTTGTCGCATTCTGATNACAAAAAGAATACATAACTA
CACAACTGTGATGCTGGCATGTAATATCAAATGTTGTTGATGTATCATGCTGTATTTAATATATAGGTAATATAACATAT
GGATGAAATATATCGCTGTGTGTGGATAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis