Browse Element(s) Details


Os.54953.1.S1_at

Description gb:AK107174.1
DB_XREF= gi:32992383
TID=Os.54953.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G07, full insert sequence.
FL= gb:AK107174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4600011/11expressed protein
LOC_Os06g380801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein
LOC_Os11g45990Os.52208.1.S1_at11/1111+27321847..27328435von Willebrand factor type A domain containing protein, expressed
LOC_Os11g46000Os.5809.1.S1_s_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.5809.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.54953.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46010Os.9332.2.S1_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46010Os.9332.2.S1_x_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46020NANA11+27349580..27352132retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46030OsAffx.10496.1.S1_at1/1111+27353868..27356775retrotransposon protein, putative, unclassified
LOC_Os11g46040OsAffx.1646.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46040OsAffx.22722.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54953.1.S1_at--1004--6691Chr11:27335709..27335733 (25 bp)
GTTCCTGATATATTTTTAGTCCTTG
LOC_Os11g46000
Os.54953.1.S1_at--35--7271Chr11:27335727..27335751 (25 bp)
GTCCTTGGTCTACTTGCATACTATA
LOC_Os11g46000
Os.54953.1.S1_at--341--5371Chr11:27335757..27335781 (25 bp)
GAAGACCACGACTATGATATTTGAT
LOC_Os11g46000
Os.54953.1.S1_at--1130--8112Chr11:27335868..27335892 (25 bp)
GGAAAGTATTTTTACCACTGAAATG
LOC_Os11g46000
Os.54953.1.S1_at--395--3331Chr11:27335883..27335907 (25 bp)
CACTGAAATGGATATCCTCCTATAT
LOC_Os11g46000
Os.54953.1.S1_at--855--3571Chr11:27335926..27335950 (25 bp)
CATTTGCATATTATCTGAACGGTCA
LOC_Os11g46000
Os.54953.1.S1_at--762--2511Chr11:27336091..27336115 (25 bp)
AACTACTTGGTTGGCATTTCGGAGA
LOC_Os11g46000
Os.54953.1.S1_at--173--8051Chr11:27336131..27336155 (25 bp)
GGAGATATCCCCTTAATGAGTGAAA
LOC_Os11g46000
Os.54953.1.S1_at--1161--411Chr11:27336160..27336184 (25 bp)
ATCTCCATAAAAACGTAACTTCAGC
LOC_Os11g46000
Os.54953.1.S1_at--945--631Chr11:27336197..27336221 (25 bp)
ATGCAACTCTACTTTTCTTTTAAAT
LOC_Os11g46000
Os.54953.1.S1_at--421--10331Chr11:27336277..27336301 (25 bp)
TTTCAACTGCAAGGATCAATACCAA
LOC_Os11g46000
Target Sequence 
GTTCCTGATATATTTTTAGTCCTTGGTCTACTTGCATACTATAATTAAGAAGACCACGACTATGATATTTGATCAGCTTT
GTTATTTATTAGTTGTATAATATTGTCTTATTTGTCAATGAATAACCTAAAAGTGCACAAGTAATCAATATAGGAATGTG
GAAAGTATTTTTACCACTGAAATGGATATCCTCCTATATATATATATATATCTCATCCATTTGCATATTATCTGAACGGT
CATGAAAATTTAATAGGCAATCTGACAATATAAATCATAGTGTGATATATCATTTTACAATCATGCAACTTTAAATTTAA
TCTATATGAGTTAAAATTTTATCGACATATCGATATTATCAATTTTGTTAAGATAGTTCGATAACTACTTGGTTGGCATT
TCGGAGATAGGAAAAAACAAAGGGAGATATCCCCTTAATGAGTGAAAAACTATCTCCATAAAAACGTAACTTCAGCATAA
ATAATTAAATGCAACTCTACTTTTCTTTTAAATTTCTTGAATTACTCAAGATGTATTTTCTTGCTTATGTAGATAAATAT
TATTTTCTTTTCAACTGCAAGGATCAATACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis