Browse Element(s) Details


Os.55213.1.S1_at

Description gb:AK107676.1
DB_XREF= gi:32992885
TID=Os.55213.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A02, full insert sequence.
FL= gb:AK107676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2435010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_x_at11/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_at10/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24350Os.55213.1.S1_at10/119+14472051..14473027expressed protein
LOC_Os09g24359NANA9+14477208..14477505NA
LOC_Os09g24370OsAffx.17872.1.S1_s_at11/119+14478027..14478829expressed protein
LOC_Os09g24380NANA9+14491085..14493131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g24390NANA9+14494773..14499151Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55213.1.S1_at--392--7791Chr09:14472486..14472510 (25 bp)
GGTGCCGCTTGATTGCTTGCCTTGT
LOC_Os09g24350
Os.55213.1.S1_at--518--6591Chr09:14472476..14472500 (25 bp)
GATTGCTTGCCTTGTTGTCTTGCTA
LOC_Os09g24350
Os.55213.1.S1_at--259--8711Chr09:14472461..14472485 (25 bp)
TGTCTTGCTAGCTCGTGTCTACGTA
LOC_Os09g24350
Os.55213.1.S1_at--243--2031Chr09:14472432..14472456 (25 bp)
CTCCGTACCTATATATTTAACACCG
LOC_Os09g24350
Os.55213.1.S1_at--966--7211Chr09:14472223..14472247 (25 bp)
GTCGAGGTCGCCATGCGTGCACTCC
LOC_Os09g24350
Os.55213.1.S1_at--621--31Chr09:14472156..14472180 (25 bp)
ATTGGTGTCGCGTGTATCATTTCAG
LOC_Os09g24350
Os.55213.1.S1_at--883--6891Chr09:14472143..14472167 (25 bp)
GTATCATTTCAGTTGCCGATCGATT
LOC_Os09g24350
Os.55213.1.S1_at--457--4231Chr09:14472128..14472152 (25 bp)
CCGATCGATTTACGGCTGATGGTGT
LOC_Os09g24350
Os.55213.1.S1_at--897--6251NONE
GATGGTGTCGTTGACCACACAACTG
NONE
Os.55213.1.S1_at--561--2191Chr09:14472093..14472117 (25 bp)
ACAACTGTTTGGTGACTGAGGGAAA
LOC_Os09g24350
Os.55213.1.S1_at--1087--251Chr09:14472067..14472091 (25 bp)
ATATGTAACGTGTGTCCATCGGTAA
LOC_Os09g24350
Target Sequence 
GGTGCCGCTTGATTGCTTGCCTTGTTGTCTTGCTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACACCGT
TAATTTTTTTAATATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAATATTTTTTTCTTATTATTAAATATGTTTTT
ATTATATATATAGTTTTACATATTTAAAAAAATTAAATAAAATAAACGATTAAATATATTTAAATAAATTAACGGCGTTA
AATATTTAAAAACGGAGGGAGTAGTCGAGGTCGCCATGCGTGCACTCCTGCATGCATGCATGCGTGGTGGTGGTGTGTGG
AGACGATGATATTGGTGTCGCGTGTATCATTTCAGTTGCCGATCGATTTACGGCTGATGGTGTCGTTGACCACACAACTG
TTTGGTGACTGAGGGAAATATATGTAACGTGTGTCCATCGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis