Browse Element(s) Details


Os.55222.1.S1_at

Description gb:AK107689.1
DB_XREF= gi:32992898
TID=Os.55222.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B09, full insert sequence.
FL= gb:AK107689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2716011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein
LOC_Os09g27160Os.55222.1.S1_at11/119+16515132..16516766expressed protein
LOC_Os09g27160Os.56118.1.S1_at9/119+16515132..16516766expressed protein
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55222.1.S1_at--1155--9391Chr09:16516356..16516380 (25 bp)
TCGTCAAGGCGCTGTTCTCCTCGTC
LOC_Os09g27160
Os.55222.1.S1_at--1142--5551Chr09:16516392..16516416 (25 bp)
GAAAGCCCAAGGCTCCAACGGCCGT
LOC_Os09g27160
Os.55222.1.S1_at--525--9431Chr09:16516499..16516523 (25 bp)
TCGGAGCGGAGGTCCGTACGCTTCT
LOC_Os09g27160
Os.55222.1.S1_at--1154--5871Chr09:16516502..16516526 (25 bp)
GAGCGGAGGTCCGTACGCTTCTGCC
LOC_Os09g27160
Os.55222.1.S1_at--482--8611Chr09:16516569..16516593 (25 bp)
TGGTGCGGAGCCTCGCCGATGTGGA
LOC_Os09g27160
Os.55222.1.S1_at--818--1591Chr09:16516619..16516643 (25 bp)
AGCTCCGATCTCTTCGAGCTGGAGA
LOC_Os09g27160
Os.55222.1.S1_at--345--451Chr09:16516626..16516650 (25 bp)
ATCTCTTCGAGCTGGAGAGCCTCCG
LOC_Os09g27160
Os.55222.1.S1_at--1002--5851Chr09:16516699..16516723 (25 bp)
GACCAACCGCGCCATTATATTGCGC
LOC_Os09g27160
Os.55222.1.S1_at--796--10191Chr09:16516714..16516738 (25 bp)
TATATTGCGCAGAGAGCAGCTTGCT
LOC_Os09g27160
Os.55222.1.S1_at--49--5932Chr09:16516727..16516751 (25 bp)
GAGCAGCTTGCTAGTTCATAAACAG
LOC_Os09g27160
Os.55222.1.S1_at--1028--6731Chr09:16516740..16516764 (25 bp)
GTTCATAAACAGTGGCAACTTCAAG
LOC_Os09g27160
Target Sequence 
TCGTCAAGGCGCTGTTCTCCTCGTCGCGCCTCCCAAGAAAGCCCAAGGCTCCAACGGCCGTCCCTCTGCCGCCGGCATCG
CCGCCGGTTCCGCAGCCACCGTGCATGTCGGCGGCGGCGACGACGACGTCGAACACCAAGGCGTCGGAGCGGAGGTCCGT
ACGCTTCTGCCCCGGCGCCGAGACGTCGGTGGTGCGGCGCAGGGTGGAGGAGCTGGTGCGGAGCCTCGCCGATGTGGAGG
AGGACGAGGACGGCAGCGACGCGAGCTCCGATCTCTTCGAGCTGGAGAGCCTCCGCGGCGCCGACGGCGACGAGCTGCCG
GTGTACGGCACGACGAGCCTCGCGACCAACCGCGCCATTATATTGCGCAGAGAGCAGCTTGCTAGTTCATAAACAGTGGC
AACTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis