Browse Element(s) Details


Os.55371.1.S1_at

Description gb:AK107963.1
DB_XREF= gi:32993172
TID=Os.55371.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C11, full insert sequence.
FL= gb:AK107963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g481404/11Hsp20/alpha crystallin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein
LOC_Os02g48122Os.24137.1.A1_at11/112+29457961..29459791expressed protein
LOC_Os02g48130Os.27653.1.S1_at11/112+29459791..29462183expressed protein
LOC_Os02g48140Os.55371.1.S1_at4/112+29462598..29463092Hsp20/alpha crystallin family protein
LOC_Os02g48150Os.54450.1.S1_s_at11/112+29465553..29466701expressed protein
LOC_Os02g48150OsAffx.24777.1.S1_at11/112+29465553..29466701expressed protein
LOC_Os02g48160OsAffx.2996.1.S1_at9/112+29469057..29470272hypothetical protein
LOC_Os02g48170OsAffx.24778.1.S1_s_at11/112+29475597..29476731expressed protein
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55371.1.S1_at--770--8471Chr02:29462704..29462728 (25 bp)
TGGCGCACGTGTTCGAGATGGACCT
LOC_Os02g48140
Os.55371.1.S1_at--1026--9371Chr02:29462758..29462782 (25 bp)
TCGAGGTGGTGGACGGCCACATCCT
LOC_Os02g48140
Os.55371.1.S1_at--735--2171Chr02:29462804..29462828 (25 bp)
ACACGAGGACGCCAATAACGCAGCC
LOC_Os02g48140
Os.55371.1.S1_at--510--5791Chr02:29463057..29463081 (25 bp)
GACGACAAGCCAGTGTGCTGCCGCT
LOC_Os02g48140
Os.55371.1.S1_at--902--4111Chr02:29463154..29463178 (25 bp)
CGCACGACACGAGCCTGTAGTAGTA
NONE
Os.55371.1.S1_at--382--1191Chr02:29463172..29463196 (25 bp)
AGTAGTACATGTCAAGCCTACCCGT
NONE
Os.55371.1.S1_at--664--211Chr02:29463180..29463204 (25 bp)
ATGTCAAGCCTACCCGTCAAAAATC
NONE
Os.55371.1.S1_at--402--9691Chr02:29463196..29463220 (25 bp)
TCAAAAATCTTGTCCTTTCGCCATT
NONE
Os.55371.1.S1_at--670--10271Chr02:29463211..29463235 (25 bp)
TTTCGCCATTGGAATTGCCGTGCCA
NONE
Os.55371.1.S1_at--221--5211Chr02:29463222..29463246 (25 bp)
GAATTGCCGTGCCAGTATGGCGCAT
NONE
Os.55371.1.S1_at--66--871Chr02:29463238..29463262 (25 bp)
ATGGCGCATGAGTGCACTTGTACAA
NONE
Target Sequence 
TGGCGCACGTGTTCGAGATGGACCTCCCCGGGCTGGCCAAGGACCAGGTCGCCGTCGAGGTGGTGGACGGCCACATCCTC
CGCGTCCGCGCCGGCGGCGAACACGAGGACGCCAATAACGCAGCCAAGGCGGGGAAGGCCAGCGGCGAGGAGGAGGAGGA
AAACGACGGCGTGAGGTGGCATTGCAGGGAGAGGGCGGCGGGGAGGCGGCGCGCGGCGGACGAGGCGAGCGCGCGGATGG
CGGACGGGGTGCTCACGGTGACCGTGCCGAAGCGGAAGGGCAAGAAGCGGCACGCCGGCAACGGCAAGGCGGCCGGCGAC
GACAAGCCAGTGTGCTGCCGCTTCTGGCCGTGACACCGCCGAGGCCGCGGCGCGCGCCGGCTCGTGTGCCCGCGTCGCGT
CGCGTTGAGTCACCCGCACGACACGAGCCTGTAGTAGTACATGTCAAGCCTACCCGTCAAAAATCTTGTCCTTTCGCCAT
TGGAATTGCCGTGCCAGTATGGCGCATGAGTGCACTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis