Browse Element(s) Details


OsAffx.2996.1.S1_at

Description tigr:9630.m04694
TID=OsAffx.2996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g481609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein
LOC_Os02g48122Os.24137.1.A1_at11/112+29457961..29459791expressed protein
LOC_Os02g48130Os.27653.1.S1_at11/112+29459791..29462183expressed protein
LOC_Os02g48140Os.55371.1.S1_at4/112+29462598..29463092Hsp20/alpha crystallin family protein
LOC_Os02g48150Os.54450.1.S1_s_at11/112+29465553..29466701expressed protein
LOC_Os02g48150OsAffx.24777.1.S1_at11/112+29465553..29466701expressed protein
LOC_Os02g48160OsAffx.2996.1.S1_at9/112+29469057..29470272hypothetical protein
LOC_Os02g48170OsAffx.24778.1.S1_s_at11/112+29475597..29476731expressed protein
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2996.1.S1_at--279--9491Chr02:29470212..29470236 (25 bp)
TCTCGACGCATCACAGGCGGGCCAA
LOC_Os02g48160
OsAffx.2996.1.S1_at--926--9131Chr02:29470180..29470204 (25 bp)
TGCGGAGGCGTCACAGACGTGGTGT
LOC_Os02g48160
OsAffx.2996.1.S1_at--770--5731Chr02:29470165..29470189 (25 bp)
GACGTGGTGTGGAGGCGGCGAATCC
LOC_Os02g48160
OsAffx.2996.1.S1_at--490--2671NONE
AAGCCGCTCTCAGGCGATGGTGGAT
NONE
OsAffx.2996.1.S1_at--480--4131NONE
CGCTCTCAGGCGATGGTGGATTCAG
NONE
OsAffx.2996.1.S1_at--539--3751Chr02:29469262..29469524 (25 bp)
CTCAGGCGATGGTGGATTCAGATTG
LOC_Os02g48160
OsAffx.2996.1.S1_at--634--7831Chr02:29469221..29469245 (25 bp)
GGTAGGGATCCCGAGCGAAAGCTTA
LOC_Os02g48160
OsAffx.2996.1.S1_at--1155--10451Chr02:29469199..29469223 (25 bp)
TTAGCCCAAGTCTTTGTGCCAACAA
LOC_Os02g48160
OsAffx.2996.1.S1_at--52--7151Chr02:29469190..29469214 (25 bp)
GTCTTTGTGCCAACAATGACTATGT
LOC_Os02g48160
OsAffx.2996.1.S1_at--110--3011Chr02:29469176..29469200 (25 bp)
AATGACTATGTCTTCGGGCGTGGTA
LOC_Os02g48160
OsAffx.2996.1.S1_at--307--971Chr02:29469108..29469132 (25 bp)
AGGAGCTCTGGACGAAAACCTAGTC
LOC_Os02g48160
Target Sequence 
TCTCGACGCATCACAGGCGGGCCAACGCGCGGTGCGGAGGCGTCACAGACGTGGTGTGGAGGCGGCGAATCCGGCGCCGC
CGCGGCCGGATCCGGCCTCCCCACGGGTGGATCCGGCGCCTCCACGCCGGAGCTGGCCGGAGCAAGCCGCTCTCAGGCGA
TGGTGGATTCAGATTGGGCGACGGACCACGGCGGTAGGGATCCCGAGCGAAAGCTTAGCCCAAGTCTTTGTGCCAACAAT
GACTATGTCTTCGGGCGTGGTAACCCTCCTGGGGGCATTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTCTGGACGA
AAACCTAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis