Browse Element(s) Details


Os.55528.1.S1_at

Description gb:D88620.1
DB_XREF= gi:2605622
GEN=Osmyb4
TID=Os.55528.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55528 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSMYB4, complete cds.
PROD=OSMYB4
FL= gb:AK108259.1 gb:D88620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5011011/11Myb-related protein Zm38, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50100Os.11800.1.S1_s_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.39411.1.A1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.11800.1.S1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50110Os.55528.1.S1_at11/111+29123363..29124496Myb-related protein Zm38, putative, expressed
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009845biological_processseed germination
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55528.1.S1_at--497--7231Chr01:29123954..29123978 (25 bp)
GTCGCCGCCACTTCTTACAAGAAGG
LOC_Os01g50110
Os.55528.1.S1_at--834--51Chr01:29124026..29124050 (25 bp)
ATTGAGTGCAGCGACGATCGTGCCC
LOC_Os01g50110
Os.55528.1.S1_at--114--6171Chr01:29124117..29124141 (25 bp)
GAGGATTTGGCGATCAGTTCTGTGC
LOC_Os01g50110
Os.55528.1.S1_at--595--6711Chr01:29124133..29124157 (25 bp)
GTTCTGTGCCGAGGATGCAGTTCAT
LOC_Os01g50110
Os.55528.1.S1_at--388--7731Chr01:29124158..29124182 (25 bp)
GGTGGCTTCGACATGGGTTCCGCTT
LOC_Os01g50110
Os.55528.1.S1_at--812--5771Chr01:29124200..29124224 (25 bp)
GACGACTTCTCCTCGTTTCTTGATT
LOC_Os01g50110
Os.55528.1.S1_at--769--5931Chr01:29124239..29124263 (25 bp)
GAGCAGTTAGGCGATCTCTTCGTCG
LOC_Os01g50110
Os.55528.1.S1_at--677--8231Chr01:29124269..29124293 (25 bp)
GGCAACGATCACGAGCATGGCAATG
LOC_Os01g50110
Os.55528.1.S1_at--853--5251Chr01:29124320..29124344 (25 bp)
GAATCCAAACAGTAATCTTTCGGGA
LOC_Os01g50110
Os.55528.1.S1_at--19--10831Chr01:29124392..29124416 (25 bp)
TTGTCTGCTGAGTCATGACCGGTGA
LOC_Os01g50110
Os.55528.1.S1_at--265--751Chr01:29124441..29124465 (25 bp)
ATGTACGACTTAATGCTTGCACCTA
LOC_Os01g50110
Target Sequence 
GTCGCCGCCACTTCTTACAAGAAGGCGGTGCCGGCCAAGCCGCCGAGGACGGCATCCTCGCCGGCCGCTGGCATTGAGTG
CAGCGACGATCGTGCCCGACCGGCCGACGGTGGCGGTGACTTCGCAGCGATGGTGAGCGCCGCCGATGCCGAGGGATTCG
AAGGAGGATTTGGCGATCAGTTCTGTGCCGAGGATGCAGTTCATGGTGGCTTCGACATGGGTTCCGCTTCCGCCATGGTG
GGTGACGACGACTTCTCCTCGTTTCTTGATTCTCTGATCAACGACGAGCAGTTAGGCGATCTCTTCGTCGTCGAGGGCAA
CGATCACGAGCATGGCAATGGTGAGATTGGTCATGGAGACGTCATGGAATCCAAACAGTAATCTTTCGGGAGATTGATCA
GGGAATAAGTTGACCATGAGAAAACATGTAAGAACAGCTTGTCTGCTGAGTCATGACCGGTGATGTGTATGTGATGGAAG
AAAACGTATGTACGACTTAATGCTTGCACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis