Browse Element(s) Details


Os.55534.1.A1_at

Description gb:AK108272.1
DB_XREF= gi:32993481
TID=Os.55534.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C04, full insert sequence.
FL= gb:AK108272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3264011/11Chloroplastic quinone-oxidoreductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55534.1.A1_at--103--2751Chr09:19470864..19470888 (25 bp)
AAGAAGAGGCTCGTGCCGCTGATCC
LOC_Os09g32640
Os.55534.1.A1_at--723--1091Chr09:19470913..19470937 (25 bp)
AGTGGCTGGTCGACATGGCCAAGCA
LOC_Os09g32640
Os.55534.1.A1_at--788--2111Chr09:19470925..19470949 (25 bp)
ACATGGCCAAGCAAGGGAAGCTCAA
LOC_Os09g32640
Os.55534.1.A1_at--889--4831Chr09:19470944..19470968 (25 bp)
GCTCAAGACCACCATAGATTCCAAG
LOC_Os09g32640
Os.55534.1.A1_at--415--291Chr09:19470957..19470981 (25 bp)
ATAGATTCCAAGTACCCTCTGAGCA
LOC_Os09g32640
Os.55534.1.A1_at--733--2831Chr09:19470966..19470990 (25 bp)
AAGTACCCTCTGAGCAGAGCACAGG
LOC_Os09g32640
Os.55534.1.A1_at--781--3291Chr09:19470985..19471009 (25 bp)
CACAGGAGGCTTGGGCTAAGAGCAT
LOC_Os09g32640
Os.55534.1.A1_at--386--3531Chr09:19471017..19471041 (25 bp)
CATGCCACGGGCAAGATCGTTGTAG
LOC_Os09g32640
Os.55534.1.A1_at--506--3071Chr09:19471162..19471186 (25 bp)
AATCATTCTCCTCATGCAAAGATTC
LOC_Os09g32640
Os.55534.1.A1_at--19--9031Chr09:19471176..19471200 (25 bp)
TGCAAAGATTCAGCCTCGATCCAGA
LOC_Os09g32640
Os.55534.1.A1_at--123--10531Chr09:19471184..19471208 (25 bp)
TTCAGCCTCGATCCAGAGTCATTCA
LOC_Os09g32640
Target Sequence 
AAGAAGAGGCTCGTGCCGCTGATCCTGATGCCCAAGAAGGAGGAGATGGAGTGGCTGGTCGACATGGCCAAGCAAGGGAA
GCTCAAGACCACCATAGATTCCAAGTACCCTCTGAGCAGAGCACAGGAGGCTTGGGCTAAGAGCATGGAAGGCCATGCCA
CGGGCAAGATCGTTGTAGAAATGGGAGGCACAGAATGAGCATTGCAAATTGCAATGTACCTCCCTAAGNGNGAGGATTAN
CACCATGGATTCATGATNTCATAAAAAAAAGATGAACANTTCGNATTGANTCTGTTGTAATCATTCTCCTCATGCAAAGA
TTCAGCCTCGATCCAGAGTCATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55534.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis