Browse Element(s) Details


Os.5599.1.S1_at

Description gb:AK068312.1
DB_XREF= gi:32978330
TID=Os.5599.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.5599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) AP2-domain DRE binding factor DBF1 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151K12, full insert sequence.
FL= gb:AK068312.1 gb:AK105725.1 gb:AY297448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3158011/11DRE binding factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31560Os.4739.1.S1_at11/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31560Os.53126.1.S1_at1/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31569Os.50979.1.S1_at10/118+19399320..19400307expressed protein
LOC_Os08g31580Os.5599.1.S1_x_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31580Os.5599.1.S1_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31590NANA8+19418166..19418456hypothetical protein
LOC_Os08g31600OsAffx.29457.1.S1_at11/118+19423320..19424178hypothetical protein
LOC_Os08g31610NANA8+19426268..19427632hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5599.1.S1_at--163--1451Chr08:19415545..19415569 (25 bp)
AGAACGCCTCATCCAGGTCCAGGGG
LOC_Os08g31580
Os.5599.1.S1_at--1113--5731Chr08:19415658..19415682 (25 bp)
GACGGCGGCTCGGAGACGTCGTCGT
LOC_Os08g31580
Os.5599.1.S1_at--181--4631Chr08:19415731..19415755 (25 bp)
GCGAGGTGCCGTGGGACGAGGCGGA
LOC_Os08g31580
Os.5599.1.S1_at--179--4771Chr08:19415804..19415828 (25 bp)
GCTGCTCAACAACAATAACTAGCTC
LOC_Os08g31580
Os.5599.1.S1_at--338--6251Chr08:19415899..19415923 (25 bp)
GATGGATTATATGTTCGTTCTTGTG
LOC_Os08g31580
Os.5599.1.S1_at--652--6711Chr08:19415911..19415935 (25 bp)
GTTCGTTCTTGTGTAGATCCTTTTC
LOC_Os08g31580
Os.5599.1.S1_at--466--4031Chr08:19415914..19415938 (25 bp)
CGTTCTTGTGTAGATCCTTTTCTTT
LOC_Os08g31580
Os.5599.1.S1_at--438--9591Chr08:19415917..19415941 (25 bp)
TCTTGTGTAGATCCTTTTCTTTTTG
LOC_Os08g31580
Os.5599.1.S1_at--582--751Chr08:19416071..19416095 (25 bp)
ATGTAGGTTGTTGTAATCAATTGTT
LOC_Os08g31580
Os.5599.1.S1_at--214--371Chr08:19416086..19416110 (25 bp)
ATCAATTGTTGGTAACTACCTGTAA
LOC_Os08g31580
Os.5599.1.S1_at--37--7831Chr08:19416096..19416120 (25 bp)
GGTAACTACCTGTAATAGAACTACT
LOC_Os08g31580
Target Sequence 
AGAACGCCTCATCCAGGTCCAGGGGCGGCGCCGGCAGGGCCATGCCCATCAACGCGCCCCTGGTCGCCGCGGCGTCGTCG
TCCTCCGGCTCCGACCACTCCGGCGGCGGCGACGACGGCGGCTCGGAGACGTCGTCGTCGTCTGCGGCGGCGTCGCCGCT
GGCGGAGATGGAGCAGCTGGACTTCAGCGAGGTGCCGTGGGACGAGGCGGAGGGGTTCGCGCTCACCAAGTACCCGTCGT
ACGAGATCGACTGGGACTCGCTGCTCAACAACAATAACTAGCTCTTCTCNTCCATAGCCCGCCATTGCCGGCCGGCGCAG
ATGAGGTTTTAGGCATTCTGCGCGGCGGCGAGGCGATGGATTATATGTTCGTTCTTGTGTAGATCCTTTTCTTTTTGTGT
TGGTTTTTTAGGTTCCGGAGGCTGCTCGCCGGCGTCGTTTTTGTGTCCGGCGTCTCCGATGTCTAGTAAGCAGTGACTCG
TTAGTGTAGTAGTTGTACAACTCTACAAATGTACAAATACTTGTGCATGTAGGTTGTTGTAATCAATTGTTGGTAACTAC
CTGTAATAGAACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis