Browse Element(s) Details


Os.50979.1.S1_at

Description gb:AK059926.1
DB_XREF= gi:32969944
TID=Os.50979.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A01, full insert sequence.
FL= gb:AK059926.1 gb:AK100845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3156910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31540OsAffx.22848.3.S1_x_at7/118+19370653..19376611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31550OsAffx.17273.1.S1_at11/118+19383815..19384267hypothetical protein
LOC_Os08g31560Os.4739.1.S1_at11/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31560Os.53126.1.S1_at1/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31569Os.50979.1.S1_at10/118+19399320..19400307expressed protein
LOC_Os08g31580Os.5599.1.S1_x_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31580Os.5599.1.S1_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31590NANA8+19418166..19418456hypothetical protein
LOC_Os08g31600OsAffx.29457.1.S1_at11/118+19423320..19424178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50979.1.S1_at--860--10651Chr08:19399763..19399787 (25 bp)
TTCCGGCTGGCGACAAGGTTTTGGA
LOC_Os08g31569
Os.50979.1.S1_at--603--1831Chr08:19399614..19399638 (25 bp)
ACGCGTGGTCTTGCGCTAGCGAGAA
LOC_Os08g31569
Os.50979.1.S1_at--855--8591Chr08:19399609..19399633 (25 bp)
TGGTCTTGCGCTAGCGAGAAATCGC
LOC_Os08g31569
Os.50979.1.S1_at--1082--5971Chr08:19399594..19399618 (25 bp)
GAGAAATCGCGCTTCCCTGTGTGGG
LOC_Os08g31569
Os.50979.1.S1_at--353--1851Chr08:19399533..19399557 (25 bp)
ACGCACGCGCAAATCCGAGCTGGCG
LOC_Os08g31569
Os.50979.1.S1_at--803--551Chr08:19399521..19399545 (25 bp)
ATCCGAGCTGGCGACGTGAGGTAAC
LOC_Os08g31569
Os.50979.1.S1_at--41--3991Chr08:19399507..19399531 (25 bp)
CGTGAGGTAACGCTCCACGTCACCG
LOC_Os08g31569
Os.50979.1.S1_at--450--5571Chr08:19399476..19399500 (25 bp)
GAAAGGCCTTAGAACAAATTGTGAA
LOC_Os08g31569
Os.50979.1.S1_at--622--731Chr08:19399419..19399443 (25 bp)
ATGTTATTTCCATTGAACTTCTAAA
LOC_Os08g31569
Os.50979.1.S1_at--464--2251Chr08:19399388..19399412 (25 bp)
AAATATCCCAAACATATCATATGGA
LOC_Os08g31569
Os.50979.1.S1_at--176--5371Chr08:19399320..19399344 (25 bp)
GAAGAAATACGAGCTCCGATCGATG
NONE
Target Sequence 
TTCCGGCTGGCGACAAGGTTTTGGAGGCGGCGGCGCGGAGCGGAGCACGGGAACGACGACGAGGTCGGCGACGCGGAGCG
GGAGGGCGCGAGGTGACAGCGAGTCGGAGGCACGCCCTCCACAATGCAGGTTCCAGCCGTTTCTCCGCCACGCGTGGTCT
TGCGCTAGCGAGAAATCGCGCTTCCCTGTGTGGGGGCGAGGAGCTCTGGTGGGGCGCGCGACCTAGCGCCACGCACGCGC
AAATCCGAGCTGGCGACGTGAGGTAACGCTCCACGTCACCGCACTGTGAAAGGCCTTAGAACAAATTGTGAAGATGCACT
GAACATCAAAAGTGTGTAAATAAAATGTTATTTCCATTGAACTTCTAAAAAGTTAAAATATCCCAAACATATCATATGGA
TCACATATAGGATAGAAAAAAAAACTAATTTAAGTCTTGGGAAGAAGAAATACGAGCTCCGATCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis