Browse Element(s) Details


OsAffx.17273.1.S1_at

Description tigr:9636.m03152
TID=OsAffx.17273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3155011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31520OsAffx.17271.1.S1_at11/118+19359315..19360250hypothetical protein
LOC_Os08g31540OsAffx.22848.3.S1_x_at7/118+19370653..19376611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31550OsAffx.17273.1.S1_at11/118+19383815..19384267hypothetical protein
LOC_Os08g31560Os.4739.1.S1_at11/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31560Os.53126.1.S1_at1/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31569Os.50979.1.S1_at10/118+19399320..19400307expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17273.1.S1_at--428--1871Chr08:19384185..19384209 (25 bp)
ACGAGCTCGACTGCGTGGATTACAA
LOC_Os08g31550
OsAffx.17273.1.S1_at--419--7511Chr08:19384171..19384195 (25 bp)
GTGGATTACAAGGTGAGGTCGCTCA
LOC_Os08g31550
OsAffx.17273.1.S1_at--731--7391Chr08:19384159..19384183 (25 bp)
GTGAGGTCGCTCATCTTCCAGTGCG
LOC_Os08g31550
OsAffx.17273.1.S1_at--644--1131Chr08:19384140..19384164 (25 bp)
AGTGCGAGGACTGCCACCGTCTCTT
LOC_Os08g31550
OsAffx.17273.1.S1_at--409--4011Chr08:19384123..19384147 (25 bp)
CGTCTCTTCCCTGACTACAAGGAAG
LOC_Os08g31550
OsAffx.17273.1.S1_at--1081--8171Chr08:19384103..19384127 (25 bp)
GGAAGATACACACGAGTGTCGGCAA
LOC_Os08g31550
OsAffx.17273.1.S1_at--982--7451Chr08:19384088..19384112 (25 bp)
GTGTCGGCAAGGTGTTCTCACTGAT
LOC_Os08g31550
OsAffx.17273.1.S1_at--1028--3211Chr08:19384081..19384105 (25 bp)
CAAGGTGTTCTCACTGATGGACGAG
LOC_Os08g31550
OsAffx.17273.1.S1_at--175--8331Chr08:19384040..19384064 (25 bp)
GGCTCGACAACGTCTTTCATGGGAC
LOC_Os08g31550
OsAffx.17273.1.S1_at--628--1851Chr08:19383989..19384013 (25 bp)
ACGACAGGTCGGTGTTGCTGCTGAC
LOC_Os08g31550
OsAffx.17273.1.S1_at--967--3971Chr08:19383980..19384004 (25 bp)
CGGTGTTGCTGCTGACAGTGACAAA
LOC_Os08g31550
Target Sequence 
ACGAGCTCGACTGCGTGGATTACAAGGTGAGGTCGCTCATCTTCCAGTGCGAGGACTGCCACCGTCTCTTCCCTGACTAC
AAGGAAGATACACACGAGTGTCGGCAAGGTGTTCTCACTGATGGACGAGAGGATGGCACCGGTGTGGCTCGACAACGTCT
TTCATGGGACGGTGTGGTGTGTGGAGTACGTCGCGGACGACAGGTCGGTGTTGCTGCTGACAGTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis