Browse Element(s) Details


OsAffx.17271.1.S1_at

Description tigr:9636.m03149
TID=OsAffx.17271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3152011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein
LOC_Os08g31510Os.53773.1.S1_s_at11/118+19357249..19358796expressed protein
LOC_Os08g31520OsAffx.17271.1.S1_at11/118+19359315..19360250hypothetical protein
LOC_Os08g31540OsAffx.22848.3.S1_x_at7/118+19370653..19376611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31550OsAffx.17273.1.S1_at11/118+19383815..19384267hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17271.1.S1_at--273--4191Chr08:19360203..19360227 (25 bp)
CCCTTGGCTTGATCTGGCAGTAGTA
LOC_Os08g31520
OsAffx.17271.1.S1_at--463--391Chr08:19359804..19360128 (25 bp)
ATCACGGTGCGTGGATGCATCGTCT
LOC_Os08g31520
OsAffx.17271.1.S1_at--319--6811Chr08:19359710..19359734 (25 bp)
GTTTTCCCTAAGACCTCGACGGATG
LOC_Os08g31520
OsAffx.17271.1.S1_at--264--2771Chr08:19359701..19359725 (25 bp)
AAGACCTCGACGGATGGCGGTAGCA
LOC_Os08g31520
OsAffx.17271.1.S1_at--219--7851Chr08:19359683..19359707 (25 bp)
GGTAGCAGTGTCATCGTTGCTCTTC
LOC_Os08g31520
OsAffx.17271.1.S1_at--875--6671Chr08:19359668..19359692 (25 bp)
GTTGCTCTTCTACCTGGAGACGTCG
LOC_Os08g31520
OsAffx.17271.1.S1_at--325--8031Chr08:19359653..19359677 (25 bp)
GGAGACGTCGTCAAGGAAGTCCCCT
LOC_Os08g31520
OsAffx.17271.1.S1_at--287--3071Chr08:19359623..19359647 (25 bp)
AATCTTCTCTCAAACAGTTGGTGCA
LOC_Os08g31520
OsAffx.17271.1.S1_at--406--8612Chr09:1025790..1026189 (25 bp)
TGGTGCAGGCTCACTCTAGATTCAT
NONE
OsAffx.17271.1.S1_at--967--1251Chr08:19359588..19359612 (25 bp)
AGATTCATCCTCTTGTGACAGTGCT
LOC_Os08g31520
OsAffx.17271.1.S1_at--798--5651Chr08:19359368..19359596 (25 bp)
GACAGTGCTCTAGCTTTTGTGCTGT
LOC_Os08g31520
Target Sequence 
CCCTTGGCTTGATCTGGCAGTAGTAAGAGCAGGATGGGCGTGGGGTGGCACGGAGGTCGATGCAGCACGTGGAGGTGCGG
TCGGCGAAGGCAGGAGGCTATCACGGTGCGTGGATGCATCGTCTTCCTTCCTGGGGGCGCTGTCGAGTCGTCCCCTTCCT
CTGGTGGGGCTGCCGGGTGAAAACCCTGTCTTAGTTTTCCCTAAGACCTCGACGGATGGCGGTAGCAGTGTCATCGTTGC
TCTTCTACCTGGAGACGTCGTCAAGGAAGTCCCCTCGCCAAATCTTCTCTCAAACAGTTGGTGCAGGCTCACTCTAGATT
CATCCTCTTGTGACAGTGCTCTAGCTTTTGTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis