Browse Element(s) Details


Os.53773.1.S1_s_at

Description gb:AK099936.1
DB_XREF= gi:32985145
TID=Os.53773.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119L03, full insert sequence.
FL= gb:AK099936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3151011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein
LOC_Os08g31510Os.53773.1.S1_s_at11/118+19357249..19358796expressed protein
LOC_Os08g31520OsAffx.17271.1.S1_at11/118+19359315..19360250hypothetical protein
LOC_Os08g31540OsAffx.22848.3.S1_x_at7/118+19370653..19376611retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53773.1.S1_s_at--1010--931Chr08:19358015..19358039 (25 bp)
AGGCAACAGCACATCACGCACGAGG
LOC_Os08g31510
Os.53773.1.S1_s_at--1127--1491Chr08:19358008..19358032 (25 bp)
AGCACATCACGCACGAGGAGTGGAA
LOC_Os08g31510
Os.53773.1.S1_s_at--817--1091Chr08:19357990..19358014 (25 bp)
AGTGGAAGGAGAAGCGCGCCCTCGC
LOC_Os08g31510
Os.53773.1.S1_s_at--922--3311Chr08:19357849..19357873 (25 bp)
CACATCGACATAGCTGCTGCTGCTG
LOC_Os08g31510
Os.53773.1.S1_s_at--430--3831Chr08:19357836..19357860 (25 bp)
CTGCTGCTGCTGCTATAAAATTGCT
LOC_Os08g31510
Os.53773.1.S1_s_at--533--9071Chr08:19357826..19357850 (25 bp)
TGCTATAAAATTGCTACTCGCACCA
LOC_Os08g31510
Os.53773.1.S1_s_at--357--7171Chr08:19357754..19357778 (25 bp)
GTCTCCGTAATATCGATGGCGGATG
LOC_Os08g31510
Os.53773.1.S1_s_at--662--6231Chr08:19357740..19357764 (25 bp)
GATGGCGGATGATCGCCTCATGCTT
LOC_Os08g31510
Os.53773.1.S1_s_at--641--10691Chr08:19357702..19357726 (25 bp)
TTCCAATCTTTCACTCGCATGCTAG
LOC_Os08g31510
Os.53773.1.S1_s_at--199--8211Chr08:19357613..19357637 (25 bp)
GGAATTTAATCCTTCATCTATGAAC
LOC_Os08g31510
Os.53773.1.S1_s_at--303--9612Chr12:3393106..3393128 (22 bp)
TCATCTATGAACTGAGCCATCCTTT
NONE
Target Sequence 
AGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCCACGGCGGCGGCGGCGCCGCCGCA
ACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGAGGCACGCTCGCCGCGGCCTGACGAG
GCCGCCCACATCGACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAACAAA
CTGTGCAGCTGCTGAATTTAAGTCTCCGTAATATCGATGGCGGATGATCGCCTCATGCTTGTATTACGCTTACTTCCAAT
CTTTCACTCGCATGCTAGCTTCCTCCATGGATTTTGATCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTCGATA
ATGGAATTTAATCCTTCATCTATGAACTGAGCCATCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53773.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis