Browse Element(s) Details


Os.56118.1.S1_at

Description gb:AK109285.1
DB_XREF= gi:32994494
TID=Os.56118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C02, full insert sequence.
FL= gb:AK109285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g271609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein
LOC_Os09g27160Os.55222.1.S1_at11/119+16515132..16516766expressed protein
LOC_Os09g27160Os.56118.1.S1_at9/119+16515132..16516766expressed protein
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56118.1.S1_at--62--10711Chr09:16515653..16515677 (25 bp)
TTGCCTGATCCCTTTGTCGCGCGCG
LOC_Os09g27160
Os.56118.1.S1_at--716--7231NONE
GTCGCGCGCGCCATTTGGCGATATT
NONE
Os.56118.1.S1_at--1048--4431NONE
GCCATTTGGCGATATTTTGCTGAGA
NONE
Os.56118.1.S1_at--26--10211Chr09:16515689..16515713 (25 bp)
TATTTTGCTGAGATTTGGGTGGTTT
LOC_Os09g27160
Os.56118.1.S1_at--377--1631Chr09:16515735..16515759 (25 bp)
AGCGGCGGCAATGCCACGGCAAGAA
LOC_Os09g27160
Os.56118.1.S1_at--110--5071Chr09:16515742..16515766 (25 bp)
GCAATGCCACGGCAAGAACGCGCCG
LOC_Os09g27160
Os.56118.1.S1_at--217--9371Chr09:16515831..16515855 (25 bp)
TCGACGCGATCTACCGTTCTCTGGA
LOC_Os09g27160
Os.56118.1.S1_at--601--451Chr09:16515839..16515863 (25 bp)
ATCTACCGTTCTCTGGACGAGGGAG
LOC_Os09g27160
Os.56118.1.S1_at--740--871Chr09:16515873..16515897 (25 bp)
ATGGCGCGGGTGCTGTCGTCGATGA
LOC_Os09g27160
Os.56118.1.S1_at--805--9171Chr09:16515948..16515972 (25 bp)
TGCCGCCGCAGTTCTGGTGGGCCAA
LOC_Os09g27160
Os.56118.1.S1_at--602--1831Chr09:16516071..16516095 (25 bp)
ACGCGTCGTCGTCCAGCTACAGCAG
LOC_Os09g27160
Target Sequence 
TTGCCTGATCCCTTTGTCGCGCGCGCCATTTGGCGATATTTTGCTGAGATTTGGGTGGTTTTTGTTACTTTGTTTGGTAT
GGAGCGGCGGCAATGCCACGGCAAGAACGCGCCGCCAACGCTGGCGCCGCCGCGGAGGGCGCGCGGCGGCGCGGGCGGGT
CGTTCTCGGCGTCGCTGCTCGACGCGATCTACCGTTCTCTGGACGAGGGAGGGGGTGGCGATGGCGCGGGTGCTGTCGTC
GATGACGCGCGGCGGTCGGAGGCGGAGGAGATGAAGGCAGCGGCAGCGGCAGCCGTGCCGCCGCAGTTCTGGTGGGCCAA
GTCGGAGCAGGCGGCGGGCGCCGCGGGCAGGAGCCGTCGCGAGTCGGTGGCTCGCCCGCGGCACTCGGGGTACGCGTCGT
CCACCGCCTCGTCGTCGGACGCGTCGTCGTCCAGCTACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis