Browse Element(s) Details


Os.56219.1.A1_at

Description gb:AK109631.1
DB_XREF= gi:32994840
TID=Os.56219.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D04, full insert sequence.
FL= gb:AK109631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4302011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified
LOC_Os04g43020Os.56219.1.A1_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020OsAffx.26438.1.S1_x_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_x_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed
LOC_Os04g43040Os.19589.1.S1_at11/114+25249577..25252424expressed protein
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56219.1.A1_at--364--5051Chr04:25240252..25240276 (25 bp)
GCAGAATTGCAGATTGCCTTCCATT
LOC_Os04g43020
Os.56219.1.A1_at--976--71Chr04:25240264..25240288 (25 bp)
ATTGCCTTCCATTTCTTGTCATGTT
LOC_Os04g43020
Os.56219.1.A1_at--444--10811Chr04:25240279..25240303 (25 bp)
TTGTCATGTTCTTCAGTTAACTGTA
LOC_Os04g43020
Os.56219.1.A1_at--234--2571Chr04:25240297..25240321 (25 bp)
AACTGTATAGTTTTCTGCTCATTTG
LOC_Os04g43020
Os.56219.1.A1_at--769--6592Chr04:25240343..25240367 (25 bp)
GATTGATGCCATGCTCTGAACAACA
LOC_Os04g43020
Os.56219.1.A1_at--676--8411Chr04:25240390..25240414 (25 bp)
GGCCCTCATTTTTTCCATGTAGTGG
LOC_Os04g43020
Os.56219.1.A1_at--276--1551Chr04:25240475..25240499 (25 bp)
AGCATTAGTCTAGGCAGTATCAAAC
LOC_Os04g43020
Os.56219.1.A1_at--95--7291Chr04:25240557..25240581 (25 bp)
GTGCCTTAACTACTCAACTAGCTAG
LOC_Os04g43020
Os.56219.1.A1_at--72--1551Chr04:25240576..25240600 (25 bp)
AGCTAGTTTGTTTTCGTCTCAATCC
LOC_Os04g43020
Os.56219.1.A1_at--1065--9391Chr04:25240589..25240613 (25 bp)
TCGTCTCAATCCATCTGTTCGGCAG
LOC_Os04g43020
Os.56219.1.A1_at--555--2191Chr04:25240632..25240656 (25 bp)
ACACACTGATTTTTGGTCGTTCGTT
LOC_Os04g43020
Target Sequence 
GCAGAATTGCAGATTGCCTTCCATTTCTTGTCATGTTCTTCAGTTAACTGTATAGTTTTCTGCTCATTTGATGATGATAG
GATTTTGATATGATTGATGCCATGCTCTGAACAACAATCACCACACCACCCCTGGTCTGGCCCTCATTTTTTCCATGTAG
TGGATGAACGCACTAATCATCATATCATTATGGCATTTTGCAACATTCATTGCACTAGAATTTAGCATTAGTCTAGGCAG
TATCAAACAAGACATTAGAGCATGTTGCCATGTACATGAACAAATGGATAGCACAACAAAAAAAAGTGCCTTAACTACTC
AACTAGCTAGTTTGTTTTCGTCTCAATCCATCTGTTCGGCAGCGGAAGATTGAGATGAAAACACACTGATTTTTGGTCGT
TCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56219.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis