Browse Element(s) Details


OsAffx.14249.1.S1_at

Description tigr:9632.m04114
TID=OsAffx.14249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ssl1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g429909/11Ssl1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified
LOC_Os04g43020Os.56219.1.A1_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020OsAffx.26438.1.S1_x_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_x_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14249.1.S1_at--83--6571Chr04:25217381..25217405 (25 bp)
GATTAAGATGGGTTTTCCGCAGAGA
LOC_Os04g42990
OsAffx.14249.1.S1_at--1074--9751Chr04:25217378..25217402 (25 bp)
TAAGATGGGTTTTCCGCAGAGAGGA
LOC_Os04g42990
OsAffx.14249.1.S1_at--794--5931Chr04:25217355..25217379 (25 bp)
GAGCAGAGGATCTTATCTCCATCTG
LOC_Os04g42990
OsAffx.14249.1.S1_at--428--6171Chr04:25217350..25217374 (25 bp)
GAGGATCTTATCTCCATCTGCTCTT
LOC_Os04g42990
OsAffx.14249.1.S1_at--713--9491Chr04:25217340..25217364 (25 bp)
TCTCCATCTGCTCTTGTCACAAGAA
LOC_Os04g42990
OsAffx.14249.1.S1_at--1107--7571Chr04:25217304..25217328 (25 bp)
GGGCTGAAGGTTACATATGTCCTAG
LOC_Os04g42990
OsAffx.14249.1.S1_at--691--1011Chr04:25217297..25217321 (25 bp)
AGGTTACATATGTCCTAGATGCAAA
LOC_Os04g42990
OsAffx.14249.1.S1_at--1027--10111NONE
TATGTCCTAGATGCAAAGTCAATAT
NONE
OsAffx.14249.1.S1_at--485--1151NONE
AGTCAATATAGTCAATCTAGCCTCC
NONE
OsAffx.14249.1.S1_at--1132--4711Chr04:25216623..25216647 (25 bp)
GCTGTCCAAAATGCAACCAACACTT
LOC_Os04g42990
OsAffx.14249.1.S1_at--432--3011Chr04:25216614..25216638 (25 bp)
AATGCAACCAACACTTCTGCCTTGA
LOC_Os04g42990
Target Sequence 
GATTAAGATGGGTTTTCCGCAGAGAGGAGCAGAGGATCTTATCTCCATCTGCTCTTGTCACAAGAAAATAAAGTCGGGGG
CTGAAGGTTACATATGTCCTAGATGCAAAGTCAATATAGTCAATCTAGCCTCCATGTTCGCTGTCCAAAATGCAACCAAC
ACTTCTGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis