Browse Element(s) Details


Os.52137.1.S1_at

Description gb:AK065106.1
DB_XREF= gi:32975124
TID=Os.52137.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N16, full insert sequence.
FL= gb:AK065106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4298011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52137.1.S1_at--77--9931Chr04:25205483..25205507 (25 bp)
TACGAGTCTTCAGGGAGGGCTTACA
LOC_Os04g42980
Os.52137.1.S1_at--711--3411Chr04:25205429..25205453 (25 bp)
CAGAGGGCAACAGCACGAGGTGACT
LOC_Os04g42980
Os.52137.1.S1_at--101--4491Chr04:25205248..25205272 (25 bp)
GCCGGCTGATCTTGGCAATTTCCAA
LOC_Os04g42980
Os.52137.1.S1_at--157--3091Chr04:25205232..25205256 (25 bp)
AATTTCCAAAAGCTCCGGCGAGGAG
LOC_Os04g42980
Os.52137.1.S1_at--186--131Chr04:25205184..25205208 (25 bp)
ATTCATCGTGTTAATTAGCTCTCGT
LOC_Os04g42980
Os.52137.1.S1_at--343--3771Chr04:25205166..25205190 (25 bp)
CTCTCGTAGTTGTTAGCTTGATTGT
LOC_Os04g42980
Os.52137.1.S1_at--1124--7831Chr04:25205140..25205164 (25 bp)
GGTACATAGTACCTGCCGATTCTTC
LOC_Os04g42980
Os.52137.1.S1_at--607--9971Chr04:25205131..25205155 (25 bp)
TACCTGCCGATTCTTCTTGCTTAAT
LOC_Os04g42980
Os.52137.1.S1_at--848--4511Chr04:25205086..25205110 (25 bp)
GCCGCAGTGGGTTAAGTTATACCGA
LOC_Os04g42980
Os.52137.1.S1_at--137--1071Chr04:25205062..25205086 (25 bp)
AGGGTTGGCAACGAGTACTGAATAC
LOC_Os04g42980
Os.52137.1.S1_at--675--6991Chr04:25205025..25205049 (25 bp)
GTACGTGCTCATTTGGTGGTGTGAA
LOC_Os04g42980
Target Sequence 
TACGAGTCTTCAGGGAGGGCTTACATGCTGTCCGGGCTGAGCTCACACTCGTGGCAGAGGGCAACAGCACGAGGTGACTN
GACGGACAGCAGCACCGTCATNTACTCCTACCAGACGCCATCCATGGTTGAGATGNTACAGCACTCCCAGAACCATCTCC
CTTCGCCTCAGGGCCGGCAAAGGCCACGGCCCCCGGTGATCGGGCAAGCCCCCCGGTGACGGCGAGGTAGCTCACCGCCG
GCTGATCTTGGCAATTTCCAAAAGCTCCGGCGAGGAGACCACGGTGAAGCACTNTGAAGCATTCATCGTGTTAATTAGCT
CTCGTAGTTGTTAGCTTGATTGTTGGTACATAGTACCTGCCGATTCTTCTTGCTTAATTATTTGATTTGAGGCTTTGAGC
CGCAGTGGGTTAAGTTATACCGAGGGTTGGCAACGAGTACTGAATACATTTTGATGGGTGTACGTGCTCATTTGGTGGTG
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis