Browse Element(s) Details


OsAffx.26436.1.S1_at

Description tigr:9632.m04107
TID=OsAffx.26436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutaredoxin - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4293011/11Glutaredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26436.1.S1_at--562--1731Chr04:25177924..25177948 (25 bp)
ACCCCACTAATCCACTATAAATACG
LOC_Os04g42930
OsAffx.26436.1.S1_at--727--571Chr04:25177933..25177957 (25 bp)
ATCCACTATAAATACGCGAGCGACG
LOC_Os04g42930
OsAffx.26436.1.S1_at--1131--5871Chr04:25177950..25177974 (25 bp)
GAGCGACGTCACACCGCAGAGATGG
LOC_Os04g42930
OsAffx.26436.1.S1_at--977--1891Chr04:25177955..25177979 (25 bp)
ACGTCACACCGCAGAGATGGGAATC
LOC_Os04g42930
OsAffx.26436.1.S1_at--694--7531Chr04:25180248..25180272 (25 bp)
GTGGCTGTGATGGTGAACCCTTTTG
LOC_Os04g42930
OsAffx.26436.1.S1_at--329--8871Chr04:25180255..25180279 (25 bp)
TGATGGTGAACCCTTTTGCCTTTCA
LOC_Os04g42930
OsAffx.26436.1.S1_at--1072--5431Chr04:25180262..25180286 (25 bp)
GAACCCTTTTGCCTTTCATTCTTTG
LOC_Os04g42930
OsAffx.26436.1.S1_at--415--10331Chr04:25180275..25180299 (25 bp)
TTTCATTCTTTGTCTCCAGTACTCT
LOC_Os04g42930
OsAffx.26436.1.S1_at--654--3591Chr04:25180278..25180302 (25 bp)
CATTCTTTGTCTCCAGTACTCTGTG
LOC_Os04g42930
OsAffx.26436.1.S1_at--132--2011Chr04:25180295..25180319 (25 bp)
ACTCTGTGCTTTTGTTAGTTTCTAT
LOC_Os04g42930
OsAffx.26436.1.S1_at--419--6791Chr04:25180308..25180332 (25 bp)
GTTAGTTTCTATATTGATTGTTGTC
LOC_Os04g42930
Target Sequence 
ACCCCACTAATCCACTATAAATACGCGAGCGACGTCACACCGCAGAGATGGGAATCGCCTCCTCCTCCTCCTCGACCCCG
GAATCCAGGAAGATGGCGCTCGCCAAGGCCAAGGAGACCGTCGCCTCCGCTCCCGTCGTCGTCTACAGCAAGTCTTACTG
TCCTTTTTGCGTCCGTGTGAAGAAGTTGTTCGAGCAGCTTGGAGCAACTTTCAAGGCCATTGAGTTGGATGGGGAGAGTG
ATGGATCTGAGCTGCAGTCGGCACTTGCTGAATGGACTGGACAAAGGACTGTTCCAAATGTCTTCATCAATGGGAAGCAT
ATTGGTGGCTGTGATGGTGAACCCTTTTGCCTTTCATTCTTTGTCTCCAGTACTCTGTGCTTTTGTTAGTTTCTATATTG
ATTGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis