Browse Element(s) Details


OsAffx.31434.2.S1_x_at

Description tigr:9639.m03869
TID=OsAffx.31434.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4205011/11hypothetical protein
LOC_Os04g428602/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31434.2.S1_x_at--689--4492Chr04:25149950..25149969 (20 bp)
GCCGTACGGGATCGACTTCCTGACT
LOC_Os04g42860
OsAffx.31434.2.S1_x_at--196--531Chr11:24795373..24795397 (25 bp)
ATCGACTTCCTGACTCACATGCCCG
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--1--2112Chr11:24795357..24795381 (25 bp)
ACATGCCCGCGCTGCCTTACCTGAG
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--661--5832Chr04:25150176..25150195 (20 bp)
GACCTCCGAGGCGAGAACCTGCTTG
LOC_Os04g42860
OsAffx.31434.2.S1_x_at--612--2632Chr11:24795313..24795337 (25 bp)
AACCTGCTTGTCTGCGCCAACTTCG
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--178--1772Chr11:24795099..24795283 (25 bp)
ACCGGCATCCAATTCCTGGCGATGC
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--96--3952Chr11:24795097..24795281 (25 bp)
CGGCATCCAATTCCTGGCGATGCGT
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--874--8272Chr11:24795096..24795280 (25 bp)
GGCATCCAATTCCTGGCGATGCGTC
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--870--3532Chr11:24795094..24795278 (25 bp)
CATCCAATTCCTGGCGATGCGTCTT
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--300--4272Chr11:24795085..24795108 (24 bp)
CCTGGCGATGCGTCTTGAGTTGGAA
LOC_Os11g42050
OsAffx.31434.2.S1_x_at--453--8912Chr11:24795046..24795070 (25 bp)
TGAGCATGACGATGCTGCAGGCACA
LOC_Os11g42050
Target Sequence 
GCCGTACGGGATCGACTTCCTGACTCACATGCCCGCGCTGCCTTACCTGAGCCCCGACCTCCGAGGCGAGAACCTGCTTG
TCTGCGCCAACTTCGCCTCCGCCGGTGTCAGCATCCTCAACGACACCGGCATCCAATTCCTGGCGATGCGTCTTGAGTTG
GAAGAAGAGGTAGGCGATGAGCATGACGATGCTGCAGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31434.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis