Browse Element(s) Details


Os.54118.1.A1_at

Description gb:AK102044.1
DB_XREF= gi:32987253
TID=Os.54118.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081M11, full insert sequence.
FL= gb:AK102044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4203011/11expressed protein
LOC_Os11g420802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54118.1.A1_at--225--7132Chr11:24776464..24776488 (25 bp)
GTCATGCGCCCGTTCATGATGACGG
LOC_Os11g42030
Os.54118.1.A1_at--856--6212Chr11:24776527..24776551 (25 bp)
GAGGCCAAGAACTTCTTCCGGCGAG
LOC_Os11g42030
Os.54118.1.A1_at--382--4831Chr11:24776592..24776616 (25 bp)
GCTCACGAAGGTGGACACGTCGATT
LOC_Os11g42030
Os.54118.1.A1_at--480--9231Chr11:24776663..24776687 (25 bp)
TCCAGGCGTGCAAACTCGTGAGACA
LOC_Os11g42030
Os.54118.1.A1_at--1021--1571Chr11:24776687..24776711 (25 bp)
AGCTCAACGAGCTGGAGGGCATCAC
LOC_Os11g42030
Os.54118.1.A1_at--469--4831Chr11:24776844..24776868 (25 bp)
GCTCATGGCGCATTTCGGAATGGGA
LOC_Os11g42030
Os.54118.1.A1_at--990--10171Chr11:24776875..24776899 (25 bp)
TATAGGGTGGAGTCTGGCCACGCCA
LOC_Os11g42030
Os.54118.1.A1_at--140--4431Chr11:24776896..24776920 (25 bp)
GCCAGGGCCAAGCTTATTGTTCATC
LOC_Os11g42030
Os.54118.1.A1_at--693--9971Chr11:24776931..24776955 (25 bp)
TACCATGTAGGCCTGTTTGGTCCAT
LOC_Os11g42030
Os.54118.1.A1_at--433--6871Chr11:24776945..24776969 (25 bp)
GTTTGGTCCATTTTCTCTGTTCAGC
LOC_Os11g42030
Os.54118.1.A1_at--717--5071Chr11:24776985..24777009 (25 bp)
GCAGCCGCAGGATATGCTTTGAGAT
LOC_Os11g42030
Target Sequence 
GTCATGCGCCCGTTCATGATGACGGCCAGCATCGGGCAGATCCGCTTCGGCGACACCTGCTCGGAGGCCAAGAACTTCTT
CCGGCGAGACGACGAGGAGATCGGGGACGAGGAGCGGTGTGCCAAGAGGCTCACGAAGGTGGACACGTCGATTGCAGAGC
CGCGGGACGTGAAGGGGGACAGGAGCAAGTCGGTGCTCTTCCAGGCGTGCAAACTCGTGAGACAGCTCAACGAGCTGGAG
GGCATCACGGAGGAGAGGAGGTGGAGGCTCATTGCTGGCGTGTGGGTGGAGATGCTATGCTACGCGGCCGGCAAGTGCAG
CGGCAATGCCCACGCGAGGCAGCTCAGCCAGGGAGGCGAGATGCTCACCGTGGTGTGGCTGCTCATGGCGCATTTCGGAA
TGGGAGACCAGTATAGGGTGGAGTCTGGCCACGCCAGGGCCAAGCTTATTGTTCATCATAATCATAGTACCATGTAGGCC
TGTTTGGTCCATTTTCTCTGTTCAGCCATCCACCATGGCCAGCAGCCGCAGGATATGCTTTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54118.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis