Browse Element(s) Details


OsAffx.19322.1.S1_at

Description tigr:9639.m03865
TID=OsAffx.19322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to L-zip+NBS+LRR
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4201011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19322.1.S1_at--1078--9791Chr11:24762476..24762498 (23 bp)
TAAGCCTTGAAGTCTGGGAACAGTC
LOC_Os11g42010
OsAffx.19322.1.S1_at--134--6331Chr11:24762445..24762469 (25 bp)
GATGAATCTGTTTCCTCGTCTTGCA
LOC_Os11g42010
OsAffx.19322.1.S1_at--188--5491Chr11:24762420..24762444 (25 bp)
GAACTTGTCATCATTCAGTGCCCAA
LOC_Os11g42010
OsAffx.19322.1.S1_at--108--1371Chr11:24762390..24762414 (25 bp)
AGAGCACTGCATATGGAGTTTCCAT
LOC_Os11g42010
OsAffx.19322.1.S1_at--223--9071Chr11:24762247..24762271 (25 bp)
TGCTTCTTCAGGCTGTGAGGGTCTA
LOC_Os11g42010
OsAffx.19322.1.S1_at--658--8891Chr11:24762232..24762256 (25 bp)
TGAGGGTCTACAGGCTCTTGATCGC
LOC_Os11g42010
OsAffx.19322.1.S1_at--1070--5191Chr11:24762177..24762201 (25 bp)
GAATTGTCATGCCTCCCACAGGGTT
LOC_Os11g42010
OsAffx.19322.1.S1_at--671--4291Chr11:24762140..24762164 (25 bp)
CCTCTCTCGCCAGCTTGAAAATTGA
LOC_Os11g42010
OsAffx.19322.1.S1_at--212--6471Chr11:24762058..24762082 (25 bp)
GATAATGTGTTTGTCTGGCTGTCCA
LOC_Os11g42010
OsAffx.19322.1.S1_at--818--3151Chr11:24762034..24762058 (25 bp)
AATTCTGCACTCCATTCCTGAAGGC
LOC_Os11g42010
OsAffx.19322.1.S1_at--658--5431Chr11:24761964..24761988 (25 bp)
GAACCATCAGGTATGTCATCAGTGC
LOC_Os11g42010
Target Sequence 
TAAGCCTTGAAGTCTGGGAACAGTCATCTAGGATGAATCTGTTTCCTCGTCTTGCAGAACTTGTCATCATTCAGTGCCCA
AAATTGAGAGCACTGCATATGGAGTTTCCATCGATTGAAAAATTGATTTTGTGGATGAATAATAAGATGTTGTACAGCTC
GAAGGAAGGTCTGAGAGGTGTAGAGAAGAGCCTCGAAAATCTTTCAATTTCTTTCTGTGAAGAGTTGCATGCTTCTTCAG
GCTGTGAGGGTCTACAGGCTCTTGATCGCCTCAAGAAGTTGGAGATATGTGGTTGTCATGAATTGTCATGCCTCCCACAG
GGTTTGCAGCATCTTTCCTCTCTCGCCAGCTTGAAAATTGATAACTGCAACAAATTGGAGATTTTGCCAGAATGGTTGGA
GAACCTACCTTTTCTACAGATAATGTGTTTGTCTGGCTGTCCAATTCTGCACTCCATTCCTGAAGGCCTAACATGTAGCG
ACATTATTGTTGAATATTGCCCCAATTTTAAAGAACCATCAGGTATGTCATCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis