Browse Element(s) Details


OsAffx.19321.1.S1_at

Description tigr:9639.m03864
TID=OsAffx.19321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Phyb1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19321.1.S1_at--139--5091Chr11:24760133..24760157 (25 bp)
GCACTAGTGAAACTGGTAGCTTGCC
LOC_Os11g42000
OsAffx.19321.1.S1_at--329--7851Chr11:24760147..24760376 (25 bp)
GGTAGCTTGCCAGAGATGTGCAGAA
LOC_Os11g42000
OsAffx.19321.1.S1_at--455--6031Chr11:24760365..24760388 (24 bp)
GAGATGTGCAGAAAAGCTTGCTTAT
LOC_Os11g42000
OsAffx.19321.1.S1_at--865--5511Chr11:24760374..24760398 (25 bp)
GAAAAGCTTGCTTATAAGAGGCAAA
LOC_Os11g42000
OsAffx.19321.1.S1_at--641--5971Chr11:24761079..24761103 (25 bp)
GAGAACTGCCAGGTGTTGTCTAACT
LOC_Os11g42000
OsAffx.19321.1.S1_at--400--5471Chr11:24761081..24761105 (25 bp)
GAACTGCCAGGTGTTGTCTAACTAA
LOC_Os11g42000
OsAffx.19321.1.S1_at--1029--9191Chr11:24761085..24761109 (25 bp)
TGCCAGGTGTTGTCTAACTAATGAA
LOC_Os11g42000
OsAffx.19321.1.S1_at--880--211Chr11:24761109..24761133 (25 bp)
ATTTGTCACCACCTGCTCTTAATCT
LOC_Os11g42000
OsAffx.19321.1.S1_at--767--3371Chr11:24761115..24761139 (25 bp)
CACCACCTGCTCTTAATCTGTGATA
LOC_Os11g42000
OsAffx.19321.1.S1_at--695--1751Chr11:24761119..24761143 (25 bp)
ACCTGCTCTTAATCTGTGATAGCTT
LOC_Os11g42000
OsAffx.19321.1.S1_at--499--9551Chr11:24761125..24761149 (25 bp)
TCTTAATCTGTGATAGCTTGAAGCA
LOC_Os11g42000
Target Sequence 
GCACTAGTGAAACTGGTAGCTTGCCAGAGATGTGCAGAAAAGCTTGCTTATAAGAGGCAAAAGGAGAAGGAAAGAGAGAA
GGAAAAAGAGATTTCTCGTGAAAAGGAAATGGAGTTAAAAGAAAGGGACAAGAGGAAAAGAGAACGTGAGGGAAGTGAAG
AAACTGAAGATACATCGGAGGATGAATCAACTGAGAAATATAGTAGAAGAAAAAAAGATCGCAAACGATCATCAAGAAAA
TCGAGCAACAATGATGAAGGCTTCGAGGAGTTCCTTGAAGGCATGTTCCCTTGATCTGGCCTTTATGTCAAAATCATCAT
CAGAAGGGGAAGCGGCACCTGTTTAATCTTCCATGACATGTTAATACTGAACGTGATTAATTGTAACTTTGTATATGATG
GTGTATTACTGCTAGTTGTTCCATTTCTAGCCTCTAGGTCTCTTGTGAGTTCTGAGATGTGAGAACTGCCAGGTGTTGTC
TAACTAATGAATTTGTCACCACCTGCTCTTAATCTGTGATAGCTTGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis