Browse Element(s) Details


Os.9625.1.S1_at

Description gb:AK062181.1
DB_XREF= gi:32972199
TID=Os.9625.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D09, full insert sequence.
FL= gb:AK062181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4199011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9625.1.S1_at--929--2471Chr11:24745000..24745024 (25 bp)
AACACTGCTTGGACAATGCCGACGA
LOC_Os11g41990
Os.9625.1.S1_at--362--6251Chr11:24744977..24745001 (25 bp)
GATGGTTTCATGTGAGCAGCCGCCA
LOC_Os11g41990
Os.9625.1.S1_at--483--2791Chr11:24744892..24744916 (25 bp)
AAGATTGATCTCTTCGCATCAGCAA
LOC_Os11g41990
Os.9625.1.S1_at--765--3031Chr11:24744869..24744893 (25 bp)
AATCCGCGCCATGAACTGTGAACAA
LOC_Os11g41990
Os.9625.1.S1_at--500--5851Chr11:24744760..24744784 (25 bp)
GACCATGACTGGTTTCTCTTGCAGA
LOC_Os11g41990
Os.9625.1.S1_at--227--5551Chr11:24744726..24744750 (25 bp)
GAAACCTTGTTGTAACCATGCCACG
LOC_Os11g41990
Os.9625.1.S1_at--435--2431Chr11:24744697..24744721 (25 bp)
AAAACCTGAGCTGATTTCCTCCGAA
LOC_Os11g41990
Os.9625.1.S1_at--843--2231Chr11:24744545..24744569 (25 bp)
AAATTGTACTACTCTCTTGGGCTAT
LOC_Os11g41990
Os.9625.1.S1_at--749--731Chr11:24744522..24744546 (25 bp)
ATGTTTTTCACGTTCGGCCATGGGA
LOC_Os11g41990
Os.9625.1.S1_at--435--1091Chr11:24744482..24744506 (25 bp)
AGTGTGTAATGGTTTTGCCGCTTGC
LOC_Os11g41990
Os.9625.1.S1_at--953--4211Chr11:24744465..24744489 (25 bp)
CCGCTTGCTTTTGCTTCTCAATAAA
LOC_Os11g41990
Target Sequence 
AACACTGCTTGGACAATGCCGACGATGGTTTCATGTGAGCAGCCGCCATTGCACCTCGGGCCATTGAAGCTTGCAGAATC
AAACACTGCTTGAGCAAAGAGAAGATGGAAGATTGATCTCTTCGCATCAGCAATCCGCGCCATGAACTGTGAACAATGAT
CATCCAGTAAAAAAAAGCCTTCACCGACATCTTCTCGTCGCCTCCAAGCCTGTCATTGTAAATTTGGTGAACTCCATGAG
GACCATGACTGGTTTCTCTTGCAGAAACAAGCAAGAAACCTTGTTGTAACCATGCCACGTCAGAAAACCTGAGCTGATTT
CCTCCGAAACGGAAAAAGGTTTTAGGTGCTAGCTCTGGAGAAATTTCATTCCTTAGCATGACCAAAAACCTAGTGCTTGT
GCTGTGACGATGAGTGGTGAGTGTATAATTGAGGGAGATATGCTACTGCTGCTGTAAATTGTACTACTCTCTTGGGCTAT
GTTTTTCACGTTCGGCCATGGGACGGTGCCCAGCAAGCAGTGTGTAATGGTTTTGCCGCTTGCTTTTGCTTCTCAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis