Browse Element(s) Details


OsAffx.19318.1.S1_at

Description tigr:9639.m03859
TID=OsAffx.19318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19318.1.S1_at--427--2351Chr11:24729514..24729538 (25 bp)
AAAGCCAAATTCCATCGACAACGAT
LOC_Os11g41950
OsAffx.19318.1.S1_at--346--531Chr11:24729501..24729525 (25 bp)
ATCGACAACGATGGATCCTTCCGAT
LOC_Os11g41950
OsAffx.19318.1.S1_at--998--1091Chr11:24729455..24729479 (25 bp)
AGTGACGGACAAATTCCGGCGCCGG
LOC_Os11g41950
OsAffx.19318.1.S1_at--1138--4231Chr11:24729434..24729458 (25 bp)
CCGGCGCCGGTTACCTCCGATGAAG
LOC_Os11g41950
OsAffx.19318.1.S1_at--473--2191Chr11:24729328..24729352 (25 bp)
ACAACTGCATCACGTACAAGGAAGA
LOC_Os11g41950
OsAffx.19318.1.S1_at--840--8191Chr11:24729309..24729333 (25 bp)
GGAAGAGGAGATGCCCGACTACGAC
LOC_Os11g41950
OsAffx.19318.1.S1_at--119--5791Chr11:24729254..24729278 (25 bp)
GACGACCTCGCGAATTGTCCTCAAG
LOC_Os11g41950
OsAffx.19318.1.S1_at--826--10811Chr11:24729240..24729264 (25 bp)
TTGTCCTCAAGACTACATCGATGAA
LOC_Os11g41950
OsAffx.19318.1.S1_at--685--1671Chr11:24729197..24729221 (25 bp)
AGCCGAGAAGAGGACAAGGCTTTCT
LOC_Os11g41950
OsAffx.19318.1.S1_at--631--7651Chr11:24729134..24729158 (25 bp)
GGGATCCTCAGGCAGTACTTCACCA
LOC_Os11g41950
OsAffx.19318.1.S1_at--158--3471Chr11:24729126..24729150 (25 bp)
CAGGCAGTACTTCACCAAAGGCTAT
LOC_Os11g41950
Target Sequence 
AAAGCCAAATTCCATCGACAACGATGGATCCTTCCGATGAAGCTCCCTCGGGGAAAAAAAGTGACGGACAAATTCCGGCG
CCGGCGCCGGTTACCTCCGATGAAGGCAAGGCGCCGGTGATGGAGAAGAAGAAGAAGAAGAAGAAGGCGAAGACGAAGAT
GGTGCGGTTTACCCAAGCGCAGATCAACAACTGCATCACGTACAAGGAAGAGGAGATGCCCGACTACGACAACATGCCGA
GTATCATTGAGATCCTCGGCGACGACCTCGCGAATTGTCCTCAAGACTACATCGATGAACTCAAGGCGATCGACGACAGC
CGAGAAGAGGACAAGGCTTTCTGGATAAAGATGCAGAACGAAATCCGGGGTGAACGGGAGGGGATCCTCAGGCAGTACTT
CACCAAAGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis