Browse Element(s) Details


OsAffx.19316.1.S1_at

Description tigr:9639.m03855
TID=OsAffx.19316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GTP-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4191010/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006400biological_processtRNA modification
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19316.1.S1_at--1082--2691Chr11:24713792..24713816 (25 bp)
AAGCTATAGCATTCAAACCACCACC
LOC_Os11g41910
OsAffx.19316.1.S1_at--1138--271Chr11:24713797..24713821 (25 bp)
ATAGCATTCAAACCACCACCACGAA
LOC_Os11g41910
OsAffx.19316.1.S1_at--920--4391Chr11:24713908..24713932 (25 bp)
GCCAACAAGTTTATGGTCTCACCTT
LOC_Os11g41910
OsAffx.19316.1.S1_at--13--7151Chr11:24713923..24714213 (25 bp)
GTCTCACCTTTCAAGGCCCTTTGAA
LOC_Os11g41910
OsAffx.19316.1.S1_at--420--2951NONE
AAGGCCCTTTGAAATCCGTACTGCT
NONE
OsAffx.19316.1.S1_at--594--551Chr11:24714214..24714238 (25 bp)
ATCCGTACTGCTTTTAGATTTGTAA
LOC_Os11g41910
OsAffx.19316.1.S1_at--329--2991Chr11:24714254..24714278 (25 bp)
AATGTTTTCATGCTTTCCTTTTATT
LOC_Os11g41910
OsAffx.19316.1.S1_at--24--10391Chr11:24714258..24714282 (25 bp)
TTTTCATGCTTTCCTTTTATTTTCG
LOC_Os11g41910
OsAffx.19316.1.S1_at--365--10351Chr11:24714273..24714297 (25 bp)
TTTATTTTCGCACCAAAGGAAGCTT
LOC_Os11g41910
OsAffx.19316.1.S1_at--979--8171Chr11:24714290..24714314 (25 bp)
GGAAGCTTATTCTTAACCTGCAGGC
LOC_Os11g41910
OsAffx.19316.1.S1_at--21--9571Chr11:24714300..24714324 (25 bp)
TCTTAACCTGCAGGCTGCCATTCGT
LOC_Os11g41910
Target Sequence 
AAGCTATAGCATTCAAACCACCACCACGAACAAGAGGTGGTAAAAGAGGTCGTGTTTATTACACAACACAGCCAACAAGT
TTATGGTCTCACCTTTCAAGGCCCTTTGAAATCCGTACTGCTTTTAGATTTGTAAAGTTCACCTTGGGGAAATGTTTTCA
TGCTTTCCTTTTATTTTCGCACCAAAGGAAGCTTATTCTTAACCTGCAGGCTGCCATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis