Browse Element(s) Details


Os.57421.1.S1_at

Description gb:AY224587.1
DB_XREF= gi:29371978
TID=Os.57421.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31145 CHP-rich zinc finger protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) isolate 31145 CHP-rich zinc finger protein-like protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4192010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57421.1.S1_at--466--5851Chr11:24719594..24719618 (25 bp)
GAGCCAATTCAATTTTTGCCGGACC
LOC_Os11g41920
Os.57421.1.S1_at--468--31NONE
ATTGGTGGCTCTGACGAGATGCAGC
NONE
Os.57421.1.S1_at--782--2311Chr11:24720610..24720634 (25 bp)
AAAGGTTGATACGACTCGGGTCATA
LOC_Os11g41920
Os.57421.1.S1_at--999--10031Chr11:24720633..24720657 (25 bp)
TAGAGAACACTGCTAGCACCGTCGA
LOC_Os11g41920
Os.57421.1.S1_at--420--1651Chr11:24720659..24720683 (25 bp)
AGCGAGACGCCCGTAGAGCAAAAGA
LOC_Os11g41920
Os.57421.1.S1_at--1054--6911Chr11:24720706..24720730 (25 bp)
GTATGTCCTCGGTGGGAAGGATCTA
LOC_Os11g41920
Os.57421.1.S1_at--167--10031Chr11:24720729..24720753 (25 bp)
TAGAGTTTATCTTGTCATACGAGGA
LOC_Os11g41920
Os.57421.1.S1_at--287--4351Chr11:24720793..24720817 (25 bp)
CCAGGCAATGGTCCGGCAACAGATT
LOC_Os11g41920
Os.57421.1.S1_at--408--292Chr11:24720843..24720867 (25 bp)
ATAGCTGGAGGGAAGTTATCTGCAC
LOC_Os11g41920
Os.57421.1.S1_at--143--1312Chr11:24732613..24732637 (25 bp)
AGATGACCCCGTGTCCGATGATGAT
NONE
Os.57421.1.S1_at--880--6312Chr11:24732650..24732674 (25 bp)
GATGACTTCTTCACCAATGATGATG
NONE
Target Sequence 
GAGCCAATTCAATTTTTGCCGGACCCAGGCATGGAAGATAAGGAATGAGATATTGAGAATTGGTGGCTCTGACGAGATGC
AGCAGGGCGTAAAGGTTGATACGACTCGGGTCATAGAGAACACTGCTAGCACCGTCGACAGCGAGACGCCCGTAGAGCAA
AAGAGGAGAAAGAAGGTGGAAACGGAGTATGTCCTCGGTGGGAAGGATCTAGAGTTTATCTTGTCATACGAGGACGATGA
ACTTGAGACATTTGATGAGGATATGCTCAAGGACCAGGCAATGGTCCGGCAACAGATTGAGAATTTTGGCTATGGTTTCC
TCCATAGCTGGAGGGAAGTTATCTGCACTGATAGTGAAGAAGAAGATGACCCCGTGTCCGATGATGATGATGATGATGAA
CAAGATGACTTCTTCACCAATGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis