Browse Element(s) Details


Os.20693.1.S1_at

Description gb:AK069539.1
DB_XREF= gi:32979563
TID=Os.20693.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022I10, full insert sequence.
FL= gb:AK069539.1 gb:AK058866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4191011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein
LOC_Os11g41960OsAffx.7381.1.S1_at11/1111+24730938..24731375hypothetical protein
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006400biological_processtRNA modification
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20693.1.S1_at--1015--131Chr11:24713849..24714323 (25 bp)
ATTACACAACACAGGCTGCCATTCG
LOC_Os11g41910
Os.20693.1.S1_at--1101--9852Chr11:24715085..24715109 (25 bp)
TACACATGCTTTTCCTTTCTTGAGA
LOC_Os11g41910
Os.20693.1.S1_at--1--5971Chr11:24715123..24715147 (25 bp)
GAGAATACAGAATGCTTTGCCTGCA
LOC_Os11g41910
Os.20693.1.S1_at--1121--10271Chr11:24715138..24715162 (25 bp)
TTTGCCTGCATTTTTTCCCAAGAGG
LOC_Os11g41910
Os.20693.1.S1_at--5--10651Chr11:24715152..24715176 (25 bp)
TTCCCAAGAGGTCAAGACTGCCGGT
LOC_Os11g41910
Os.20693.1.S1_at--263--5731Chr11:24715219..24715243 (25 bp)
GACTGGAGGTCATCTACTAGGTGTT
LOC_Os11g41910
Os.20693.1.S1_at--213--3711Chr11:24715235..24715259 (25 bp)
CTAGGTGTTGTGACTACATGGTGCT
LOC_Os11g41910
Os.20693.1.S1_at--1134--10151Chr11:24715262..24715286 (25 bp)
TATAAGTTCTGTATCCTTGGATGTC
LOC_Os11g41910
Os.20693.1.S1_at--107--10611Chr11:24715318..24715342 (25 bp)
TTCTGACATTTGCTTGTGCCTTGGA
LOC_Os11g41910
Os.20693.1.S1_at--1069--10811Chr11:24715331..24715355 (25 bp)
TTGTGCCTTGGACGAATACTGAATA
LOC_Os11g41910
Os.20693.1.S1_at--694--9491Chr11:24715362..24715386 (25 bp)
TCTCCGTTTCAATTTCAGGTTATAA
LOC_Os11g41910
Target Sequence 
ATTACACAACACAGGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTTTTCCCCGAGACATAC
CGTCGTTACATGGAAAAGAAGCTTCGCTCTGATGCTGGATTCCCAGGAACCCCTATTCGTTTATTGTGGCGTAGCNAGGA
AGAGACCAGATAAAAAAGGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGCGTTAGCCACA
TGAGTTACACATGCTTTTCCTTTCTTGAGAGCGGAAAAAGGGAGAGAATACAGAATGCTTTGCCTGCATTTTTTCCCAAG
AGGTCAAGACTGCCGGTAAAAAAAGAGTACAAATTGTATATGTAGTGGACGAGTACTAGGACTGGAGGTCATCTACTAGG
TGTTGTGACTACATGGTGCTAGTATAAGTTCTGTATCCTTGGATGTCTAGGATGACCAGCAANTTGCCACGTTTGGTGTT
CTGACATTTGCTTGTGCCTTGGACGAATACTGAATAGTACTCTCTCCGTTTCAATTTCAGGTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis