Browse Element(s) Details


Os.26992.1.S1_at

Description gb:AK100303.1
DB_XREF= gi:32985512
TID=Os.26992.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078B22, full insert sequence.
FL= gb:AK100303.1 gb:AK066498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4204011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26992.1.S1_at--508--1611Chr11:24788438..24788462 (25 bp)
AGCTGAACAGTATCCATGACCAGGA
LOC_Os11g42040
Os.26992.1.S1_at--205--5851Chr11:24788421..24788445 (25 bp)
GACCAGGAGAGAATCATATCCGTCA
LOC_Os11g42040
Os.26992.1.S1_at--390--211Chr11:24788406..24788430 (25 bp)
ATATCCGTCAGGGACCTATACTTTC
LOC_Os11g42040
Os.26992.1.S1_at--932--1611Chr11:24788332..24788356 (25 bp)
AGCTGGACGCCCCATGAGGCCATGA
LOC_Os11g42040
Os.26992.1.S1_at--228--71Chr11:24788108..24788132 (25 bp)
ATTGCTACGAGCCTATATAAACTTT
LOC_Os11g42040
Os.26992.1.S1_at--369--9391Chr11:24788055..24788079 (25 bp)
TCGATCGTCGACTGTTTACTGGTTT
LOC_Os11g42040
Os.26992.1.S1_at--257--91Chr11:24788017..24788041 (25 bp)
ATTCGGTCGATCGTCAAGTTGTCGC
LOC_Os11g42040
Os.26992.1.S1_at--703--511Chr11:24788008..24788032 (25 bp)
ATCGTCAAGTTGTCGCGTATGTTAT
LOC_Os11g42040
Os.26992.1.S1_at--642--4871Chr11:24787858..24787882 (25 bp)
GCTTTGAAACTAGTTTACCGTCTTG
LOC_Os11g42040
Os.26992.1.S1_at--102--1811Chr11:24787815..24787839 (25 bp)
ACGAGAATTTGTTGGTCGGTAGCCA
LOC_Os11g42040
Os.26992.1.S1_at--540--7191Chr11:24787801..24787825 (25 bp)
GTCGGTAGCCAGACTATGAGAATCT
LOC_Os11g42040
Target Sequence 
AGCTGAACAGTATCCATGACCAGGAGAGAATCATATCCGTCAGGGACCTATACTTTCCNCAGTTATGGCTATCCAGAGAG
AAACGAAATNCCAGCTAGTAGCAGCCAGCTGGACGCCCCATGAGGCCATGATATCNCAGTTCNCAGGCATAAGCATTACN
CAAGCTTGTCNCATCATCAAGAAGGCNGGAGCTAGCNCGGATTNTATTGCTACGAGCCTATATAAACTTTTACTGGTTTG
TTATTTGCAGACATTCGGTCGATCGTCGACTGTTTACTGGTTTGTTATTTGCAGACATTCGGTCGATCGTCAAGTTGTCG
CGTATGTTATTTNTTGCTTGTACTTTCNCTTNCCATGGGATATCATTTGTATCAAATAATCGTAANANCTTTGTGTTGTT
TAATTGTTTCTCAATTTTCTTTCCTTTTTTTTTCTTTAGAAAAAAGCAAAGCCTTGCTTTGAAACTAGTTTACCGTCTTG
TTTAGAAAGTTTAAGGTTACGAGAATTTGTTGGTCGGTAGCCAGACTATGAGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis