Browse Element(s) Details


Os.50426.2.S1_x_at

Description gb:AK101623.1
DB_XREF= gi:32986832
TID=Os.50426.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052L15, full insert sequence.
FL= gb:AK101623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4207011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42080Os.54118.1.A1_at2/1111+24832078..24834273expressed protein
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50426.2.S1_x_at--921--2451Chr11:24822874..24822898 (25 bp)
AACAATCCCATATTGGAGCTGCGGG
LOC_Os11g42070
Os.50426.2.S1_x_at--299--5911Chr11:24822988..24823012 (25 bp)
GAGCTCGAGCATTTGACACTTAATT
LOC_Os11g42070
Os.50426.2.S1_x_at--252--1571Chr11:24823058..24823082 (25 bp)
AGCTACTGGACTGTCTAGAGCCCAA
LOC_Os11g42070
Os.50426.2.S1_x_at--83--2251Chr11:24823124..24823148 (25 bp)
AAACGTTCCCGTGCTGGATGGCCAA
LOC_Os11g42070
Os.50426.2.S1_x_at--1140--8411Chr11:24823143..24823167 (25 bp)
GGCCAACACAAATCCACAACTTAAG
LOC_Os11g42070
Os.50426.2.S1_x_at--669--9751Chr11:24823200..24823224 (25 bp)
TAATCTGAAGTGCAGCAGTCTCCCG
LOC_Os11g42070
Os.50426.2.S1_x_at--778--4931Chr11:24823227..24823251 (25 bp)
GCTTGGGCAGCTACATCAACTTGAG
LOC_Os11g42070
Os.50426.2.S1_x_at--1035--611Chr11:24823316..24823340 (25 bp)
ATGCTGATACATTCCGTTCTCTAAA
LOC_Os11g42070
Os.50426.2.S1_x_at--100--6391Chr11:24823344..24823368 (25 bp)
GATCGTCTTTTCTCATATGGTTAAC
LOC_Os11g42070
Os.50426.2.S1_x_at--521--9791Chr11:24823365..24823389 (25 bp)
TAACCTACAATGTTGGCCGGTGGAA
LOC_Os11g42070
Os.50426.2.S1_x_at--953--6051Chr11:24823417..24823441 (25 bp)
GAGTTGTCAATTATCCAATGCCCAA
LOC_Os11g42070
Target Sequence 
AACAATCCCATATTGGAGCTGCGGGATTTGGTAAAATTGAAAAGACTGGGTTTGGAAAACATTGCAAATATTTCCAATGA
GGATGCCGAGAAAATACAACTGCAAAAGAAACATGAGCTCGAGCATTTGACACTTAATTGCAATATGGATGCTGAAAACA
GAAAATCAAGTTCTGAAGTGAAGGAGCTACTGGACTGTCTAGAGCCCAACCCAGGGTTGAAAATACTGGAGATCATTTCT
TATGCAGGGGAAACGTTCCCGTGCTGGATGGCCAACACAAATCCACAACTTAAGAAGCTCACTCAGATCAGAATCATCAG
ATTGATTAATCTGAAGTGCAGCAGTCTCCCGCCGCTTGGGCAGCTACATCAACTTGAGACTCTAGAGATCAGTGGAATGA
ATGCCATAAAAAATGTCAGCAGTGAGCTACACGGTGAACTGAATGCTGATACATTCCGTTCTCTAAAGAAGATCGTCTTT
TCTCATATGGTTAACCTACAATGTTGGCCGGTGGAAAATGGTGCTATATGTGAACATCTTAAAGAGTTGTCAATTATCCA
ATGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50426.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis