Browse Element(s) Details


OsAffx.1238.1.S1_at

Description gb:NM_188768.1
DB_XREF= gi:34904619
GEN=OSJNBa0004G10.21
TID=OsAffx.1238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0004G10.21 (OSJNBa0004G10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g420901/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42080Os.54118.1.A1_at2/1111+24832078..24834273expressed protein
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42100OsAffx.19324.1.S1_at11/1111+24857003..24859425Leucine Rich Repeat family protein, expressed
LOC_Os11g42110NANA11+24860073..24860558hypothetical protein
LOC_Os11g42120OsAffx.19326.1.S1_at11/1111+24866925..24867314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1238.1.S1_at--504--7571Chr01:8084832..8084856 (25 bp)
GGGCGCACCCGAATTTGACACGGAA
NONE
OsAffx.1238.1.S1_at--881--5611Chr01:8084848..8084872 (25 bp)
GACACGGAAGCCGTCGGAGTCTCAG
NONE
OsAffx.1238.1.S1_at--1029--6991Chr01:8084899..8084923 (25 bp)
GTACGGTACCGCCTGTTACGTGACA
NONE
OsAffx.1238.1.S1_at--414--1231Chr01:8084923..8084947 (25 bp)
AGTTCGTTATTTGACGCGGTCGCCA
NONE
OsAffx.1238.1.S1_at--1054--311Chr01:8084947..8084971 (25 bp)
ATACGGCCGTGGAGTCTTCGATCGA
NONE
OsAffx.1238.1.S1_at--179--3371Chr01:8085028..8085052 (25 bp)
CACCGGCTCTGGGTTGATTGTATTT
NONE
OsAffx.1238.1.S1_at--409--10791Chr01:8085045..8085069 (25 bp)
TTGTATTTTGGCGTTACCTGCACGG
NONE
OsAffx.1238.1.S1_at--1131--5011Chr01:8085166..8085189 (24 bp)
GCAGGTGAAGTCTACGCCTCAGCTG
NONE
OsAffx.1238.1.S1_at--874--2411Chr01:8085245..8085269 (25 bp)
AAAACGGAAACTGTGCACGCGAATT
NONE
OsAffx.1238.1.S1_at--443--5331NONE
GAAGTTTTCAGACATGCTCATTGGA
NONE
OsAffx.1238.1.S1_at--558--8692Chr01:8088246..8088270 (25 bp)
TGTGCACTATGCACGGATACCGCAT
NONE
Target Sequence 
GGGCGCACCCGAATTTGACACGGAAGCCGTCGGAGTCTCAGTCGGCGCTGCGGCCGGCCTCGCGATGGTACGGTACCGCC
TGTTACGTGACAGTTCGTTATTTGACGCGGTCGCCATACGGCCGTGGAGTCTTCGATCGATCCTCCTCGCCGCGCGCAGC
CGGCCCACGCGTCGTACGCGAGCGACGGCAAAAATCCACCGGCTCTGGGTTGATTGTATTTTGGCGTTACCTGCACGGTC
GCTTGCGCGCGTCGTACGTGGCCGGGGCGGCAGGTGAAGTCTACGCCTCAGCTGGCGCTGCCGGCCGGGCGGGCGGCGCC
GGGCGTGAGAGGGGGTTTCAACGATATGTAAAACGGAAACTGTGCACGCGAATTGTCAAACAGCGTGGAGAAGTTTTCAG
ACATGCTCATTGGATATCAGTTAATCATTATGTGCACTATGCACGGATACCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis