Browse Element(s) Details


OsAffx.19324.1.S1_at

Description tigr:9639.m03875
TID=OsAffx.19324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4210011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42080Os.54118.1.A1_at2/1111+24832078..24834273expressed protein
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42100OsAffx.19324.1.S1_at11/1111+24857003..24859425Leucine Rich Repeat family protein, expressed
LOC_Os11g42110NANA11+24860073..24860558hypothetical protein
LOC_Os11g42120OsAffx.19326.1.S1_at11/1111+24866925..24867314hypothetical protein
LOC_Os11g42130NANA11+24870585..24873821transposon protein, putative, unclassified
LOC_Os11g42140NANA11+24874452..24880610transposon protein, putative, unclassified
LOC_Os11g42150OsAffx.7382.1.S1_at11/1111+24881400..24883829hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19324.1.S1_at--1038--4791Chr11:24858286..24858310 (25 bp)
GCTCGTCGGAATGCCTAAAGGGATT
LOC_Os11g42100
OsAffx.19324.1.S1_at--953--1451Chr11:24858365..24858389 (25 bp)
AGAAGAGAGCCCTGCCATCTCAATG
LOC_Os11g42100
OsAffx.19324.1.S1_at--457--4831Chr11:24858409..24858433 (25 bp)
GCTCAGGAAGCTTGGCATTGTGATT
LOC_Os11g42100
OsAffx.19324.1.S1_at--35--6611Chr11:24858430..24858454 (25 bp)
GATTGGCACAATGGCTGTTCCGACA
LOC_Os11g42100
OsAffx.19324.1.S1_at--1074--10531Chr11:24858482..24858506 (25 bp)
TTCAGGGCGCTCGAATCGCTCAAGA
LOC_Os11g42100
OsAffx.19324.1.S1_at--990--7711Chr11:24858514..24858538 (25 bp)
GGGTGTGCTGGCTTCTGATAGCAAA
LOC_Os11g42100
OsAffx.19324.1.S1_at--732--8151Chr11:24858540..24858564 (25 bp)
GGAAAATTGAAGCATCGTCGCATCA
LOC_Os11g42100
OsAffx.19324.1.S1_at--387--2411Chr11:24858578..24858602 (25 bp)
AAAATGAAGTTTGCGCTTCCTCCAA
LOC_Os11g42100
OsAffx.19324.1.S1_at--416--1451Chr11:24858609..24858633 (25 bp)
AGAAGCTAGATCTCCGATGCTTCCC
LOC_Os11g42100
OsAffx.19324.1.S1_at--802--1911Chr11:24858638..24858662 (25 bp)
ACGGATTTCGCTCAGTGGGTTACAC
LOC_Os11g42100
OsAffx.19324.1.S1_at--883--9371Chr11:24858768..24858792 (25 bp)
TCGAGTATGATCACGATCGGCTTAA
LOC_Os11g42100
Target Sequence 
GCTCGTCGGAATGCCTAAAGGGATTGGCCGGCTCACACGGCTCGAGGTCCTCAAGGGATTTGTGGTTGCAAATCCAAGCA
GAAGAGAGCCCTGCCATCTCAATGAGCTCACCAAGCTGAACAAGCTCAGGAAGCTTGGCATTGTGATTGGCACAATGGCT
GTTCCGACAGATGATGAGTTCATGAAATTGGGCGAGTTCAGGGCGCTCGAATCGCTCAAGATCAGATGGGGTGTGCTGGC
TTCTGATAGCAAAGGGAAAATTGAAGCATCGTCGCATCAAAAACCGATCGACAAAATGAAGTTTGCGCTTCCTCCAAATC
TGAAGAAGCTAGATCTCCGATGCTTCCCGCTGACGGATTTCGCTCAGTGGGTTACACCGAAGGGTGTTAAGAAGCTGTAC
ATTAGGGGAGGAAAACTGATGACACTTGGAGATGAACAGGGCTGGGAGGCAGAGGTGCTTCGGCTGAGATTTCTGAATGA
TCTCGAGTATGATCACGATCGGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis